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Protein Overview: APC1_ARATH

General Information:
Name(s) found: APC1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|15239171|ref|NP_196175.1| EMB2771 (EMBRYO DEFECTIVE 2771); ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|10178133|dbj|BAB11545.1| meiotic check point regulator-like protein [Arabidopsis thaliana] [NCBI NR]
  • Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1 [Swiss-Prot]
  • (Q9FFF9) Meiotic check point regulator-like protein [athaliana3702.FASTAC.txt]
  • meiotic check point regulator-like protein [Arabidopsis thaliana]gi|15239171|ref|NP_196175.1| E3 ubiquitin ligase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 E3 ubiquitin ligase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EMB2771, APC1 | APC1 (EMBRYO DEFECTIVE 2771); ubiquitin-protein ligase | chr5:1641453-1654686 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • APC1; ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • meiotic check point regulator-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654685 FORWARD LENGTH=1678 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1678 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [TAS]
    Biological Process: ubiquitin-dependent protein catabolic process [TAS]
    Molecular Function: ubiquitin-protein ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPGVRQLTV LGKFKPFGLI AEATDGKSPD DSYQYFLFDP ELTGERDDAD GNDANFSRQR  60
   61 EHELFIRDNC NVRKGYALVE ANFIGYWYNA CWSNLGRGTE AFLCVLQIAC LTIYNTSGEV 120
  121 VSVPLMRTVK SIWPLPCGLL LEQAGEVNPP SHVPFSPVSP ILGSREMLRQ RKEVGNSSPQ 180
  181 NFHSPVAHDL ISKRDMPCMS SHLILRDPLE EPGPTYVEER GKLTIMKDYD ERTIWTSDRL 240
  241 PLMTSYNKGK MQHSVWAAEF IESNLEASAS CSSGIVPDAV LSKRVSFRRI WQAKGAKKAA 300
  301 SKVFLATDNS VPVICFLILE QKKLLSVGLQ TVEINNEILF DVKPDISWSV SAIAAAPVVV 360
  361 TRSQVKIGLL PHLDIIVLSP ENDLFLYSGK QCLCRYVLPS WLGESIGSGD GESAKTDSGF 420
  421 RNLKITGLSD AVLGSINLSV NHSQIFRCAL TGKPSSSLAN DCIAAIAEGL RSDLYSLFLS 480
  481 LLWGDGHSDL QGSSIHFEWE ALCNIFLEIC QKPTVVHRKQ PKTASESSWE FLLISKFHKT 540
  541 YSRFHNGITS INRLDLEGIV PFDSKICSEE TLGSSCELMV QSLDCLHAVY ESLKMDNLRK 600
  601 QDLHHLAVLL CNIAKFLDEK CYLDYYIRDF PRLSTTIGAC TTLSSSRKPP NLFRWLENCL 660
  661 RRGCLSTNFD DLPDLIRRDG CSIVSWARKV VSFYSVLFGD KPEGRTLSSG VPCNIAPGSY 720
  721 SCNEELTILA MAGERFGLHQ LDLLPSGVSL PLRHALDSCR ESPPADWPAI AYVLLGREDM 780
  781 ALSVFRNFSS SKEFEMQSNT SLISMSIPYM LHLHPVIVPS SESIGLENTK IEDTNSVDGS 840
  841 VIDGMEHIFN SYTQLRYGRD LRLNEVRRLL CSARPVVVQT AANPTISDQE QQQAFTVPKL 900
  901 VLAGRLPSQQ NAIVNLDPNI RNIQELKTWP EFHNAVAAGL RLAPLQGKVS RTWIRYNKPG 960
  961 EPNAVHAGLL FGLGLQGYLH VLNLSDIYQY FTQDHESTTV GLMLGLAASY RGTMQPDIAK1020
 1021 ALFFHVPARY QASYTEFEIP TLLQSAALVS VGMLFEGSAH QQTMQLLLGE IGRRSAGDNV1080
 1081 LEREGYAVSA GFSLGLVALG RGGDALGSMD SLVNRLLLYL GAKEERSILV PSLEDHRSAA1140
 1141 QITDGSTSNV DITAPGAIIA LTLMYLKTES EVIFSKLSIP QTHYDLECVR PDFIMLRVIA1200
 1201 RNLIMWSRIC PTCDWIQSQV PEVVKNGISQ LRDDMDNMYE VDVEALVQAY VNIVAGACIS1260
 1261 LGLRFAGTRD GNARDLLNSY ALYLLNEIKP LSATPGNAFP RGISKFVDRG TLEMCLYLII1320
 1321 ISLSVVMAGS GDLQVFRLLR FLRSRNSADG HANYGTQMAV SLATGFLFLG GGMRTFSTNN1380
 1381 GSLAMLLITL YPRLPSGPND NRCHLQAFRH LYVLATEARW LQTIDVDSGL PVYAPLEVTV1440
 1441 KETKLYSETK FCEITPCILP ERAILKRICV CGPRYWPQQI ELVFGLRTLG ESNLIANSHR1500
 1501 ELDSDSVDHL VSTFSSDPSL IAFAQLCCDK SWNNSFDFLI LDLILWSQVA LAYNEAVSTG1560
 1561 RLASSGGFVQ SIFLASLRKR CEEVLNCSTE LKINLRNYLT SEAWPYDKNS KLQKDIIILS1620
 1621 WYLKWFNVPS PSIIKAAVEK IKSKSKNSTS AIPLLRLLLP NTHISVIGEI DRVFFPSN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] MSA 1.013977 View MSA. No confident structure predictions are available.
    2 View Details [98..276] deduced N/A No confident structure predictions are available.
    3 View Details [277..397] MSA 1.042994 View MSA. No confident structure predictions are available.
    4 View Details [398..517] MSA 1.041996 View MSA. No confident structure predictions are available.
    5 View Details [518..609] MSA 1.102995 View MSA. No confident structure predictions are available.
    6 View Details [610..711] MSA 2.124989 View MSA. No confident structure predictions are available.
    7 View Details [712..883] MSA 1.124982 View MSA. No confident structure predictions are available.
    8 View Details [884..1031] MSA 1.132986 View MSA. No confident structure predictions are available.
    9 View Details [1032..1104] deduced N/A No confident structure predictions are available.
    10 View Details [1105..1209] MSA 2.137995 View MSA. No confident structure predictions are available.
    11 View Details [1210..1347] MSA 3.134993 View MSA. No confident structure predictions are available.
    12 View Details [1348..1499] MSA 3.135985 View MSA. No confident structure predictions are available.
    13 View Details [1500..1678] MSA 1.062991 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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