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Protein Overview: TRB2_ARATH

General Information:
Name(s) found: TRB2_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    nucleosome [IEA]
    Biological Process: response to gibberellin stimulus [IEP]
    response to abscisic acid stimulus [IEP]
    response to salt stress [IEP]
    response to jasmonic acid stimulus [IEP]
    response to cadmium ion [IEP]
    response to salicylic acid stimulus [IEP]
    response to ethylene stimulus [IEP]
    response to auxin stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]
    protein homodimerization activity [IPI]
    double-stranded telomeric DNA binding [IDA]
    single-stranded telomeric DNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPKQKWTP EEEAALKAGV LKHGTGKWRT ILSDTEFSLI LKSRSNVDLK DKWRNISVTA  60
   61 LWGSRKKAKL ALKRTPPGTK QDDNNTALTI VALTNDDERA KPTSPGGSGG GSPRTCASKR 120
  121 SITSLDKIIF EAITNLRELR GSDRTSIFLY IEENFKTPPN MKRHVAVRLK HLSSNGTLVK 180
  181 IKHKYRFSSN FIPAGARQKA PQLFLEGNNK KDPTKPEENG ANSLTKFRVD GELYMIKGMT 240
  241 AQEAAEAAAR AVAEAEFAIT EAEQAAKEAE RAEAEAEAAQ IFAKAAMKAL KFRIRNHPW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] PSI-BLAST 15.39794 v-Myb
    2 View Details [117..225] PSI-BLAST 9.522879 Histone H5, globular domain
    3 View Details [226..299] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle