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Protein Overview: TRN1_ARATH

General Information:
Name(s) found: TRN1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9758186|dbj|BAB08571.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15240531|ref|NP_200365.1| TRN1 (TORNADO 1) [Arabidopsis thaliana] [NCBI NR]
  • Protein TORNADO 1 OS=Arabidopsis thaliana GN=TRN1 PE=2 SV=1 [Swiss-Prot]
  • (Q9FJ57) Gb|AAD39572.1 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15240531|ref|NP_200365.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LOP1, TRN1 | TRN1 (TORNADO 1) | chr5:22513548-22517769 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: TRN1, LOP1 | tornado 1 | chr5:22496322-22500543 REVERSE LENGTH=1380 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1380 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: auxin polar transport [IDA][IGI]
    multidimensional cell growth [IMP]
    leaf vascular tissue pattern formation [IMP]
    radial pattern formation [IMP]
    meristem structural organization [IMP]
    leaf morphogenesis [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEPDQSFK DLSWFLQAIK DPQQTFFNLQ TLSFSSSGNT THCQLITESS MNINVTRDNL  60
   61 TSLSQIFIEL ATSLETQTSL RNLEFEGIFW EIELLQSLGL LLDNTSKIKQ LAFRKNRFSE 120
  121 QCLNELSEIL KRNRFLKEVM FLESSIGYRG ATLLGSALQV NDSLEELQIW EDSIGSKGAE 180
  181 ELSRMIEMNS SLKLFSIFDS SPFTATPLIS AVLGMNREME VHMWSGDHKR DRSLKLVEFL 240
  241 PESKTLRIYQ IDISGSCRVA AALGMNTTVR SLDMTGAKLN SRWAKEFRWV LEQNKTLREV 300
  301 KLSKTGLKDK AVVYIAAGLF KNKSLQSLYV DGNRFGSVGV EDLLCPLSRF SALQLQANIT 360
  361 LRSIVFGGSN TKIGRDGLTA VLKMVTTNET VVHLGIHDDA SLGPDDFIHI FKSLQKNASL 420
  421 RRFSLQGCKG VRGDRVLEAI TETLQINPLI EEIDLARTPL QDSGKADEIY QKLGHNGRKI 480
  481 DEAETDDSLK DMPLTEPKSV RAFLCGQNYA GKTTLCNSIL QSSSASGFPY VENVRNLMNP 540
  541 VEQVVKTVGG MKIKTFKDEE TKISMWNLAG QHEFFALHDL MFPSPCFFLI VLSLFRKPSN 600
  601 KEPKTPAEVE EELEYWLRFI VSNSRKAIQQ CMKPNVTIVL THSEKINLQS ESFQATVGCI 660
  661 QRLRDKFQAL VEFYPTVFTV DARSSPSVSK LTHHIRMTSK AILQRVPRVY QLCNDIVQLL 720
  721 SDWRSENSNK PIMRWKAFAD LCQFKVPSLR IKSRNENIQI VETRRHAIAT CLHQMGEVIY 780
  781 FDDLGFLILD YEWFCGEVLT QLIKLDVRKQ STGERNGFVS RKELEKTLRS SLQSPIPGMT 840
  841 SKVLEHFDAC DLVKMMKKVE LCYEQDPSSP DSSLLVPSIL EEGRGKTQKW QINTHDCVYS 900
  901 GRHLQCDDSS HMFLTAGFFP RLQVHLHNRI MELKNQHGAT YSLEKYLIAI TIHGINIRVE 960
  961 LGGQLGNYID VLACSSKSLT ETLRLIHQLI IPAIQSSCRG VILLEHIIRP QCVQDLTPPR1020
 1021 FRQSQFVSLH RLKEALSSVP AETMYDYQHT WDSVLDSGKT VLRAGFDLAR NLLSDDDFRE1080
 1081 VLQRRYHDLH NLAQELQVPT DENPEADNHV PVTNELEKVD PSFGGIAKGV EAVLQRLKII1140
 1141 EQEIRDLKQE IQGLRYYEHR LLIQLHHKVN YLVNYNVQMD ERKVPNMFYF IRAENYGRRL1200
 1201 ITSMVPGMVA LRIHMLCEFR REMHVVEDQL GCDVMQIDNQ AVKCLAPYMT NFMKLVTFAL1260
 1261 RIGANWAAGM GHMIPDLSHT IAHLANPAVM TGAAGAAGAI GVAAALGRNR GRDRDIQEQE1320
 1321 QRAAQQWLID YLREQTCSTG RDIAEKFGLW RVRYRDDGSI AWICKRHMIT RAHEVIQVPL1380
 1381

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..667] PSI-BLAST 33.30103 No description for 3cigA was found.
    2 View Details [668..1097] PSI-BLAST 20.154902 No description for 3dpuA was found.
    3 View Details [1098..1152] deduced N/A No confident structure predictions are available.
    4 View Details [1153..1273] deduced N/A No confident structure predictions are available.
    5 View Details [1274..1380] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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