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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRN1_ARATH
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEPDQSFK DLSWFLQAIK DPQQTFFNLQ TLSFSSSGNT THCQLITESS MNINVTRDNL  60
   61 TSLSQIFIEL ATSLETQTSL RNLEFEGIFW EIELLQSLGL LLDNTSKIKQ LAFRKNRFSE 120
  121 QCLNELSEIL KRNRFLKEVM FLESSIGYRG ATLLGSALQV NDSLEELQIW EDSIGSKGAE 180
  181 ELSRMIEMNS SLKLFSIFDS SPFTATPLIS AVLGMNREME VHMWSGDHKR DRSLKLVEFL 240
  241 PESKTLRIYQ IDISGSCRVA AALGMNTTVR SLDMTGAKLN SRWAKEFRWV LEQNKTLREV 300
  301 KLSKTGLKDK AVVYIAAGLF KNKSLQSLYV DGNRFGSVGV EDLLCPLSRF SALQLQANIT 360
  361 LRSIVFGGSN TKIGRDGLTA VLKMVTTNET VVHLGIHDDA SLGPDDFIHI FKSLQKNASL 420
  421 RRFSLQGCKG VRGDRVLEAI TETLQINPLI EEIDLARTPL QDSGKADEIY QKLGHNGRKI 480
  481 DEAETDDSLK DMPLTEPKSV RAFLCGQNYA GKTTLCNSIL QSSSASGFPY VENVRNLMNP 540
  541 VEQVVKTVGG MKIKTFKDEE TKISMWNLAG QHEFFALHDL MFPSPCFFLI VLSLFRKPSN 600
  601 KEPKTPAEVE EELEYWLRFI VSNSRKAIQQ CMKPNVTIVL THSEKINLQS ESFQATVGCI 660
  661 QRLRDKFQAL VEFYPTVFTV DARSSPSVSK LTHHIRMTSK AILQRVPRVY QLCNDIVQLL 720
  721 SDWRSENSNK PIMRWKAFAD LCQFKVPSLR IKSRNENIQI VETRRHAIAT CLHQMGEVIY 780
  781 FDDLGFLILD YEWFCGEVLT QLIKLDVRKQ STGERNGFVS RKELEKTLRS SLQSPIPGMT 840
  841 SKVLEHFDAC DLVKMMKKVE LCYEQDPSSP DSSLLVPSIL EEGRGKTQKW QINTHDCVYS 900
  901 GRHLQCDDSS HMFLTAGFFP RLQVHLHNRI MELKNQHGAT YSLEKYLIAI TIHGINIRVE 960
  961 LGGQLGNYID VLACSSKSLT ETLRLIHQLI IPAIQSSCRG VILLEHIIRP QCVQDLTPPR1020
 1021 FRQSQFVSLH RLKEALSSVP AETMYDYQHT WDSVLDSGKT VLRAGFDLAR NLLSDDDFRE1080
 1081 VLQRRYHDLH NLAQELQVPT DENPEADNHV PVTNELEKVD PSFGGIAKGV EAVLQRLKII1140
 1141 EQEIRDLKQE IQGLRYYEHR LLIQLHHKVN YLVNYNVQMD ERKVPNMFYF IRAENYGRRL1200
 1201 ITSMVPGMVA LRIHMLCEFR REMHVVEDQL GCDVMQIDNQ AVKCLAPYMT NFMKLVTFAL1260
 1261 RIGANWAAGM GHMIPDLSHT IAHLANPAVM TGAAGAAGAI GVAAALGRNR GRDRDIQEQE1320
 1321 QRAAQQWLID YLREQTCSTG RDIAEKFGLW RVRYRDDGSI AWICKRHMIT RAHEVIQVPL1380
 1381 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle