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Protein Overview: PTR20_ARATH

General Information:
Name(s) found: PTR20_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Putative protein NRT1/ PTR FAMILY 2.14 OS=Arabidopsis thaliana GN=NPF2.14 PE=5 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 555 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA][ISS]
    Biological Process: oligopeptide transport [IEA][ISS]
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNEKGTSSS DLTTRQRKPL GWKAMPYIIG NETLERLATF GLMANFMVYM VREYHMDQVQ  60
   61 AVTLINTWSA LTNFAPIIGA FISDSYTGKF NTIVFGSIAE LLGMLVLTFT SLVPNLRPPP 120
  121 CTADQITGQC IPYSYSQLYV LLSGLFLLSV GTGGIRSCSV PFSLDQFDDS TEEGREGSRS 180
  181 FFSWYYTTHT IVQLVSMTLV LYVQNNISWG IGFAIPTVLN FFALLLLFVG TRYYVFVKPE 240
  241 GSVFSGVFKV LVAAYKKRKA RFTSGIDYHQ PLLETDLQSN KLVLTDQFRF LNKAVIVMNN 300
  301 DEAGNEEWRT CTVRQIEDIK SIISIIPIFA SSIIGFLAMN QQQTFTVSQA LKMDLQFPGT 360
  361 SYLIPPASIT VISLLNIGIW LPFYETVLVR HIENITKQNG GISLLQKVGI GNIFSISTML 420
  421 ISGIVERKRR DLSLNGVKMS VFWLTPQQVL MGFYQVFTIV GLTEFFNKQV PINMRSIGNS 480
  481 LLYLGLSLAS YLSSAMVSIV HSVTARGGQS WLTDDIDKSK LDCFYYFIAA LSTLNFIFFF 540
  541 WCARRYRYRN YSNEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..433] PSI-BLAST 3.69897 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
    2 View Details [434..555] FFAS03 1.38 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  2.54286095434601 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.01247278444729 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.77039368764865 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.66673693200184 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  1.27747734153012 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.33203350453105 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.24475883286552 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.24475883286552 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.2309068592963 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.18188709249385 bayes_pls_golite062009
  • binding
    		•  0.105551689569449 bayes_pls_golite062009
  • glycerol-3-phosphate transmembrane transporter activity
    		•  1.26964387230144E-4 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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