YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR20_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.80
Transmembrane Helix	33	51	0.59
Non-Cytoplasmic	52	60	0.60
Transmembrane Helix	61	82	0.79
Cytoplasmic	83	89	0.69
Transmembrane Helix	90	113	0.84
Non-Cytoplasmic	114	137	0.76
Transmembrane Helix	138	160	0.77
Cytoplasmic	161	180	0.88
Transmembrane Helix	181	203	0.85
Non-Cytoplasmic	204	210	0.75
Transmembrane Helix	211	231	0.91
Cytoplasmic	232	318	0.96
Transmembrane Helix	319	339	0.89
Non-Cytoplasmic	340	361	0.90
Transmembrane Helix	362	384	0.91
Cytoplasmic	385	403	0.91
Transmembrane Helix	404	425	0.86
Non-Cytoplasmic	426	443	0.87
Transmembrane Helix	444	466	0.78
Cytoplasmic	467	480	0.85
Transmembrane Helix	481	503	0.93
Non-Cytoplasmic	504	522	0.92
Transmembrane Helix	523	543	0.94
Cytoplasmic	544	555	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNEKGTSSS DLTTRQRKPL GWKAMPYIIG NETLERLATF GLMANFMVYM VREYHMDQVQ  60
   61 AVTLINTWSA LTNFAPIIGA FISDSYTGKF NTIVFGSIAE LLGMLVLTFT SLVPNLRPPP 120
  121 CTADQITGQC IPYSYSQLYV LLSGLFLLSV GTGGIRSCSV PFSLDQFDDS TEEGREGSRS 180
  181 FFSWYYTTHT IVQLVSMTLV LYVQNNISWG IGFAIPTVLN FFALLLLFVG TRYYVFVKPE 240
  241 GSVFSGVFKV LVAAYKKRKA RFTSGIDYHQ PLLETDLQSN KLVLTDQFRF LNKAVIVMNN 300
  301 DEAGNEEWRT CTVRQIEDIK SIISIIPIFA SSIIGFLAMN QQQTFTVSQA LKMDLQFPGT 360
  361 SYLIPPASIT VISLLNIGIW LPFYETVLVR HIENITKQNG GISLLQKVGI GNIFSISTML 420
  421 ISGIVERKRR DLSLNGVKMS VFWLTPQQVL MGFYQVFTIV GLTEFFNKQV PINMRSIGNS 480
  481 LLYLGLSLAS YLSSAMVSIV HSVTARGGQS WLTDDIDKSK LDCFYYFIAA LSTLNFIFFF 540
  541 WCARRYRYRN YSNEQ