| Protein: | PTR20_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 555 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR20_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
346.0 | [0..2] | [550..8] |
|
Region A: Residues: [1-433] |
1 11 21 31 41 51
| | | | | |
1 MDNEKGTSSS DLTTRQRKPL GWKAMPYIIG NETLERLATF GLMANFMVYM VREYHMDQVQ 60
61 AVTLINTWSA LTNFAPIIGA FISDSYTGKF NTIVFGSIAE LLGMLVLTFT SLVPNLRPPP 120
121 CTADQITGQC IPYSYSQLYV LLSGLFLLSV GTGGIRSCSV PFSLDQFDDS TEEGREGSRS 180
181 FFSWYYTTHT IVQLVSMTLV LYVQNNISWG IGFAIPTVLN FFALLLLFVG TRYYVFVKPE 240
241 GSVFSGVFKV LVAAYKKRKA RFTSGIDYHQ PLLETDLQSN KLVLTDQFRF LNKAVIVMNN 300
301 DEAGNEEWRT CTVRQIEDIK SIISIIPIFA SSIIGFLAMN QQQTFTVSQA LKMDLQFPGT 360
361 SYLIPPASIT VISLLNIGIW LPFYETVLVR HIENITKQNG GISLLQKVGI GNIFSISTML 420
421 ISGIVERKRR DLS
|
| Detection Method: |  |
| Confidence: | 3.69897 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transporter activity | 2.54286095434601 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.01247278444729 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.77039368764865 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.66673693200184 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 1.27747734153012 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.33203350453105 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.24475883286552 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.24475883286552 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.2309068592963 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.18188709249385 | bayes_pls_golite062009 |
| binding | 0.105551689569449 | bayes_pls_golite062009 |
| glycerol-3-phosphate transmembrane transporter activity | 1.26964387230144E-4 | bayes_pls_golite062009 |
|
Region A: Residues: [434-555] |
1 11 21 31 41 51
| | | | | |
1 LNGVKMSVFW LTPQQVLMGF YQVFTIVGLT EFFNKQVPIN MRSIGNSLLY LGLSLASYLS 60
61 SAMVSIVHSV TARGGQSWLT DDIDKSKLDC FYYFIAALST LNFIFFFWCA RRYRYRNYSN 120
121 EQ
|
| Detection Method: | |
| Confidence: | 1.38 |
| Match: | 1pw4A |
| Description: | Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli |
| Matching Structure (courtesy of the PDB): |
|
