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Protein Overview: ATB13_ARATH

General Information:
Name(s) found: ATB13_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6644295|gb|AAF20996.1|AF208044_1 homeodomain leucine-zipper protein ATHB13 [Arabidopsis thaliana] [NCBI NR]
  • pir||H96719 homeobox gene 13 protein, 11736-10437 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22137260|gb|AAM91475.1| At1g69780/T6C23_2 [Arabidopsis thaliana] [NCBI NR]
  • gi|15982929|gb|AAL09811.1| At1g69780/T6C23_2 [Arabidopsis thaliana] [NCBI NR]
  • gi|15222452|ref|NP_177136.1| ATHB13; DNA binding / sequence-specific DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|12325190|gb|AAG52541.1|AC013289_8 homeobox gene 13 protein; 11736-10437 [Arabidopsis thaliana] [NCBI NR]
  • gi|118573191|sp|Q8LC03.2|ATB13_ARATH RecName: Full=Homeobox-leucine zipper protein ATHB-13; AltName: Full=Homeodomain transcription factor ATHB-13; AltName: Full=HD-ZIP protein ATHB-13 [NCBI NR]
  • Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2 [Swiss-Prot]
  • (Q9S7A4) Homeobox gene 13 protein (AT1G69780/T6C23_2) [athaliana3702.FASTAC.txt]
  • At1g69780/T6C23_2 [Arabidopsis thaliana]gi|15982929|gb|AAL09811.1| At1g69780/T6C23_2 [Arabidopsis thaliana]gi|6644295|gb|AAF20996.1| homeodomain leucine-zipper protein ATHB13 [Arabidopsis thaliana]gi|25404838|pir||H96719 homeobox gene 13 protein, 11736 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Homeobox-leucine zipper protein 13 (HB-13) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATHB13 | ATHB13; DNA binding / transcription factor | chr1:26262829-26264128 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g69780/T6C23_2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • homeodomain leucine-zipper protein ATHB13 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATHB13; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • homeobox gene 13 protein; 11736-10437 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26259166-26260465 FORWARD LENGTH=294 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 294 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    cotyledon morphogenesis [IMP]
    leaf morphogenesis [IMP]
    response to sucrose stimulus [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]
    sequence-specific DNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC  60
   61 CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN FELGNKLEPE RKMQLARALG 120
  121 LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR 180
  181 EQTESINLNK ETEGSCSNRS DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP 240
  241 SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] deduced N/A No confident structure predictions are available.
    2 View Details [74..156] PSI-BLAST 23.30103 DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
    3 View Details [157..208] FFAS03 1.13 Mitotic arrest deficient-like 1, Mad1
    4 View Details [209..294] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle