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Protein Overview: SKP2A_ARATH

General Information:
Name(s) found: SKP2A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9454572|gb|AAF87895.1|AC015447_5 Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||B86347 hypothetical protein F24J8.5 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|19699206|gb|AAL90969.1| At1g21410/F24J8_17 [Arabidopsis thaliana] [NCBI NR]
  • gi|18394987|ref|NP_564139.1| SKP2A [Arabidopsis thaliana] [NCBI NR]
  • gi|16604366|gb|AAL24189.1| At1g21410/F24J8_17 [Arabidopsis thaliana] [NCBI NR]
  • F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1 [Swiss-Prot]
  • (Q9LPL4) F24J8.5 protein (At1g21410/F24J8_17) [athaliana3702.FASTAC.txt]
  • At1g21410/F24J8_17 [Arabidopsis thaliana]gi|16604366|gb|AAL24189.1| At1g21410/F24J8_17 [Arabidopsis thaliana]gi|25518370|pir||B86347 hypothetical protein F24J8.5 [imported] - Arabidopsis thalianagi|18394987|ref|NP_564139.1| F-box family protein [Arabid [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 F-box family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SKP2A | SKP2A; protein binding | chr1:7497468-7499375 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g21410/F24J8_17 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SKP2A [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: SKP2A | F-box/RNI-like superfamily protein | chr1:7497479-7499386 FORWARD LENGTH=360 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 360 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    SCF ubiquitin ligase complex [IPI]
    Biological Process: positive regulation of cell division [IMP]
    SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [IPI]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD  60
   61 AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD KPQLEDNAVE AIANHCHELQ 120
  121 ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV 180
  181 KAVTDNALEA IGNNCNQMQS LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV 240
  241 VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS 300
  301 QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH 360
  361

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..291] PSI-BLAST 16.154902 Skp2; Cyclin A/CDK2-associated p19, Skp2
    2 View Details [292..360] PSI-BLAST 4.0 Rab geranylgeranyltransferase alpha-subunit, N-terminal domain; Rab geranylgeranyltransferase alpha-subunit, insert domain; Rab geranylgeranyltransferase alpha-subunit, C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle