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Protein Overview: gi|15238188, gi|...

General Information:
Name(s) found: gi|15238188 [NCBI NR]
gi|10177366 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|15238188|ref|NP_198997.1| geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related [Arabidopsis thaliana] [NCBI NR]
  • gi|10177366|dbj|BAB10657.1| geranylgeranyl transferase alpha subunit-like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 687 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein amino acid prenylation [IEA]
    Molecular Function: protein prenyltransferase activity [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHGRKREEDP NPEETAAKAL ELRSLQSQFM SNHHQKIYTK EAIQLSAKLL ITNPEFYTAW  60
   61 NYPKLAFESR LDEDSDPSLV NSIIDEELGV VQNALERNVK SYGAWYHRKW VLSKKGHYYP 120
  121 SLENELQLLN DYQKQAHQKQ DDEKQDDPSR NFHAWNYRRF VVELTKTSEE DELQYTTDMI 180
  181 SDISFTIYSA WHYRSVLVSS LVAKKADGFM PKETIRRELD YVHSAIFTLE EKQSGWFYYL 240
  241 WLLDQTVKME IPLRFSSWPS DGSIIILSGP DCFNASSSTT KLTTFCSESG SFPLILYFDQ 300
  301 AVSGVSSSTV TIGSELKDLV WEPVSDKKNS QVDSCVWVAR LKFDCREPCF SRKETKVKVS 360
  361 LGGIVSSMGC NLTAPYEFVF TLRIHDTVEV ELSQQESIVS WTDGFDNWDD NALSNDLNSL 420
  421 TALNADTGFE WRKKAIKIEI ELFRTLPDSK IGKLILARLL MAEETMISNG VHYKEILQLY 480
  481 NDLMALDSWH NQYYKDEHSV ALIHKVTSRT ESMSRHLFRY RNMNNIICLR LNNLTLSRIA 540
  541 AVEKLLFVQM LDLSHNELHS AEGLEAMQLL CCLNLSHNRI RSFSALDSLR HLKQLRVLDV 600
  601 SHNHICGELP VDTTRYLCSS PLSNSGETGR EVPNKYQDAY LVLRDLMKLK QLDIRGNDLI 660
  661 FAGEEFSSFV RQVVPKLVWL DGHKLTS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..582] PSI-BLAST 43.30103 Rab geranylgeranyltransferase alpha-subunit, N-terminal domain; Rab geranylgeranyltransferase alpha-subunit, insert domain; Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
    2 View Details [583..687] PSI-BLAST 29.522879 No description for 2omuA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein farnesyltransferase activity
    		•  5.38889352801159 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle