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Protein Overview: gi|12323256, gi|...

General Information:
Name(s) found: gi|15221717 [NCBI NR]
gi|12323256 [NCBI NR]
Description(s) found:
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  • gi|15221717|ref|NP_176510.1| RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator [Arabidopsis thaliana] [NCBI NR]
  • gi|12323256|gb|AAG51608.1|AC010795_12 chromatin structure regulator, putative; 94915-98581 [Arabidopsis thaliana] [NCBI NR]
  • (Q9CAM1) Chromatin structure regulator, putative [athaliana3702.FASTAC.txt]
  • chromatin structure regulator, putative; 94915-98581 [Arabidopsis thaliana]gi|15221717|ref|NP_176510.1| hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator | chr1:23447353-23451019 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / hydrolase, acting on ester bonds [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • chromatin structure regulator, putative; 94915-98581 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Transcription elongation factor Spt6 | chr1:23443688-23447354 FORWARD LENGTH=1197 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Chromatin structure regulator, putative; 94915-98581 OS=Arabidopsis thaliana GN=F16M19.22 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1197 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [IEA]
    regulation of transcription from RNA polymerase II promoter [IEA]
    Molecular Function: hydrolase activity, acting on ester bonds [IEA]
    transcription elongation regulator activity [IEA]
    RNA binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRKKMKYKQ GTDSNALRYA NDVFGDPEEL LKLRKKDLKY NEKIERKLED EFEPMVLSEK  60
   61 YMTEKDDEIR KLDVPERMQI FEEAIGIVSL DDMSIQEESN WIYARLLQEQ GQGCLINKDD 120
  121 IVKFLEMFHV QKLEIPFIAM YRKEQCRSLL DSSDDDHDGS DFNLDKKLET KWHKVLWMIQ 180
  181 DLDRKWVLLR KRKTALFGYY TKRFEEETCM SDLNKSLFES VIKSLQAAET EREVDDVDSK 240
  241 FNLHFPHCEI DEGQYKRPNR KSQYSICSKF GIKEFANKFG YSAEQLGLAL SLEKVFVDEL 300
  301 EDAKKTPEEM ALNYECAMFG DSQAVLKGAR HMAAVEISCE PSIRKYVRGI FMENAVVSTS 360
  361 PTPDGNVVID SFHRFSAVKW LSEKPLRKFD GVQWLLIQKA EEEKLLQVTF KLPENQMNRI 420
  421 ISECSEHYLS VGVSKYAQLW NEQRKLILED AVHGFVLPSM EKEARSLLTS RAKTQLLSEY 480
  481 GQVLWNKVSS GPYRRNNNTS EEEAAPRVLA CCWGPGNPET TFVMLDSSGE LVDVLYSGSI 540
  541 GLRSRDVNDQ KRKKMDQDRF LKFIRDHQPD VLALAAVNLS CVRLKDEIYE AIFQMVEELP 600
  601 LNYVDDRIYD FPLVYADESL PRLYENSRIS SEQLPQQAGI VKRAVSLGRY LQNPLAMIST 660
  661 LCGPGRDILS WKLHSFQDFL DPDEKYEMVE QVMVDITNQV GIDINLAASH EWLFSPLQFV 720
  721 SGLGPRKAAS LQKSLVRAGS IFVRKELINH GIGKKVFVNA AGFLRIRRSG LACSSSQFID 780
  781 LLDDTRIHPE SYGLAQELAK DVYAHDTVRG DEDDAIEMAI EHVRDEPASL RKIVLDEYLR 840
  841 SKNQENKKET YSLIMRELSC GFQDWRSLFK EVDSDEEFYM ISGETKETIG EGRIVQATVK 900
  901 KVTSGKAKCV LDCGLPGILL KEDYSDDGRD IVDLSNKLCE GDIVTCKVKS ILKQRYHVLL 960
  961 VCKESEMRKH RNLGDVDDYY HEEKRNSVLI EKEKVPKEKK QFKSRMIVHP RFQNITAEQA1020
 1021 TVYLSDKNIG ESIVRPSSRG LNHLTLMIKI SDNVYANKEI IEGEKENKDI VSLQRIGKTL1080
 1081 KIGNETFEDL DEVMDRYVDP LVTHLMTMLN HRKFRTGTKS EIDDLLRVEK GVNPKMVVYS1140
 1141 FGVSHEHPGS FILSYIRSAN PHHEYIGLYP KGFKFRKRMF GDLDKLAAYF KRHIDNQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] deduced N/A No confident structure predictions are available.
    2 View Details [90..1000] PSI-BLAST 1000.0 No description for 3bzcA was found.
    3 View Details [1001..1135] PSI-BLAST 16.522879 Crystal structure of intact alpha subunit of aIF2 from Pyrococcus abyssi
    4 View Details [1136..1197] MSA 1.11999 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle