YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|12323256, gi|...
Organism: Arabidopsis thaliana
Length: 1197 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|12323256, gi|....

Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRKKMKYKQ GTDSNALRYA NDVFGDPEEL LKLRKKDLKY NEKIERKLED EFEPMVLSEK  60
   61 YMTEKDDEIR KLDVPERMQI FEEAIGIVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-1000]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDDMSIQEES NWIYARLLQE QGQGCLINKD DIVKFLEMFH VQKLEIPFIA MYRKEQCRSL  60
   61 LDSSDDDHDG SDFNLDKKLE TKWHKVLWMI QDLDRKWVLL RKRKTALFGY YTKRFEEETC 120
  121 MSDLNKSLFE SVIKSLQAAE TEREVDDVDS KFNLHFPHCE IDEGQYKRPN RKSQYSICSK 180
  181 FGIKEFANKF GYSAEQLGLA LSLEKVFVDE LEDAKKTPEE MALNYECAMF GDSQAVLKGA 240
  241 RHMAAVEISC EPSIRKYVRG IFMENAVVST SPTPDGNVVI DSFHRFSAVK WLSEKPLRKF 300
  301 DGVQWLLIQK AEEEKLLQVT FKLPENQMNR IISECSEHYL SVGVSKYAQL WNEQRKLILE 360
  361 DAVHGFVLPS MEKEARSLLT SRAKTQLLSE YGQVLWNKVS SGPYRRNNNT SEEEAAPRVL 420
  421 ACCWGPGNPE TTFVMLDSSG ELVDVLYSGS IGLRSRDVND QKRKKMDQDR FLKFIRDHQP 480
  481 DVLALAAVNL SCVRLKDEIY EAIFQMVEEL PLNYVDDRIY DFPLVYADES LPRLYENSRI 540
  541 SSEQLPQQAG IVKRAVSLGR YLQNPLAMIS TLCGPGRDIL SWKLHSFQDF LDPDEKYEMV 600
  601 EQVMVDITNQ VGIDINLAAS HEWLFSPLQF VSGLGPRKAA SLQKSLVRAG SIFVRKELIN 660
  661 HGIGKKVFVN AAGFLRIRRS GLACSSSQFI DLLDDTRIHP ESYGLAQELA KDVYAHDTVR 720
  721 GDEDDAIEMA IEHVRDEPAS LRKIVLDEYL RSKNQENKKE TYSLIMRELS CGFQDWRSLF 780
  781 KEVDSDEEFY MISGETKETI GEGRIVQATV KKVTSGKAKC VLDCGLPGIL LKEDYSDDGR 840
  841 DIVDLSNKLC EGDIVTCKVK SILKQRYHVL LVCKESEMRK HRNLGDVDDY YHEEKRNSVL 900
  901 IEKEKVPKEK K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 3bzcA
Description: No description for 3bzcA was found.

Predicted Domain #3
Region A:
Residues: [1001-1135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFKSRMIVHP RFQNITAEQA TVYLSDKNIG ESIVRPSSRG LNHLTLMIKI SDNVYANKEI  60
   61 IEGEKENKDI VSLQRIGKTL KIGNETFEDL DEVMDRYVDP LVTHLMTMLN HRKFRTGTKS 120
  121 EIDDLLRVEK GVNPK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1yz6A
Description: Crystal structure of intact alpha subunit of aIF2 from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [1136-1197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVYSFGVSH EHPGSFILSY IRSANPHHEY IGLYPKGFKF RKRMFGDLDK LAAYFKRHID  60
   61 NQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle