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Protein Overview: LRP6C_ARATH

General Information:
Name(s) found: LRP6C_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 455 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    ribonucleoprotein complex [IEA]
    Biological Process: RNA processing [IEA]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG  60
   61 YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG GDPTAQHQHV HDPAAAFYIS 120
  121 NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP 180
  181 VSYIASTKKI KALTSNHHLV SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA 240
  241 ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA 300
  301 DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL 360
  361 TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR SFGIGLGVSL GIPSLGSHES 420
  421 SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..130] deduced N/A No confident structure predictions are available.
    2 View Details [131..335] PSI-BLAST 39.0 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    3 View Details [336..455] PSI-BLAST 29.522879 Sex-lethal protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle