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Protein Overview: VAP21_ARATH

General Information:
Name(s) found: VAP21_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8809600|dbj|BAA97151.1| VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|30695123|ref|NP_851144.1| vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21553413|gb|AAM62506.1| VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|17104633|gb|AAL34205.1| putative VAMP-associated protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15238034|ref|NP_199529.1| vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14334974|gb|AAK59664.1| putative VAMP (vesicle-associated membrane protein)-associated protein [Arabidopsis thaliana] [NCBI NR]
  • Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=1 SV=1 [Swiss-Prot]
  • (Q9LVU1) VAMP (Vesicle-associated membrane protein)-associated protein-like (Putative VAMP-associated protein) [athaliana3702.FASTAC.txt]
  • VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana]gi|17104633|gb|AAL34205.1| putative VAMP-associated protein [Arabidopsis thaliana]gi|14334974|gb|AAK59664.1| putative VAMP (vesicle-associated membrane protein)-ass [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Vesicle-associated membrane family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | vesicle-associated membrane family protein / VAMP family protein | chr5:19178611-19180492 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative VAMP-associated protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • VAMP (vesicle-associated membrane protein)-associated protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • structural molecule [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative VAMP (vesicle-associated membrane protein)-associated protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr5:19161384-19163265 REVERSE LENGTH=220 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 220 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: NONE FOUND
    Molecular Function: structural molecule activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG  60
   61 VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH TDVDELPQDT FTKDSGKTLT 120
  121 ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV 180
  181 RRRRNQRNSG NGLSLKLAAM VGLIGLIIGF ILKLTLASPT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 34.154902 Solution structure of the MSP domain of mouse VAMP-associated proteinA
    2 View Details [143..220] MSA 2.09699 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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