YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAP21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG  60
   61 VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH TDVDELPQDT FTKDSGKTLT 120
  121 ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV 180
  181 RRRRNQRNSG NGLSLKLAAM VGLIGLIIGF ILKLTLASPT

Type	Start	End	Confidence
Cytoplasmic	1	191	0.88
Transmembrane Helix	192	214	0.91
Non-Cytoplasmic	215	220	0.75