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Protein Overview: LFR_ARATH

General Information:
Name(s) found: LFR_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9294188|dbj|BAB02090.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|20465317|gb|AAM20062.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18403609|ref|NP_566721.1| LFR (LEAF AND FLOWER RELATED); binding [Arabidopsis thaliana] [NCBI NR]
  • gi|18176265|gb|AAL60013.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Armadillo repeat-containing protein LFR OS=Arabidopsis thaliana GN=LFR PE=2 SV=1 [Swiss-Prot]
  • (Q9LS90) Genomic DNA, chromosome 3, P1 clone: MXC7 (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|18176265|gb|AAL60013.1| unknown protein [Arabidopsis thaliana]gi|9294188|dbj|BAB02090.1| unnamed protein product [Arabidopsis thaliana]gi|18403609|ref|NP_566721.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | binding | chr3:8164022-8166152 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LFR | ARM repeat superfamily protein | chr3:8164015-8166145 FORWARD LENGTH=460 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Leaf and flower related protein OS=Arabidopsis thaliana GN=LFR PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 460 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: flower development [IMP]
    leaf development [IMP]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKRELGKSG GNSGGSSGPP AKRGRPFGST SANSAAAAAA AAAADAMSPS ALLGPSLLVH  60
   61 NSFVEQNNRR IVLALQSGLK SEVTWALNTL TLLSFKEKED IRRDVMPLAK IAGLLDALLL 120
  121 IIDDWRDIAL PKDLTRGTRV RTLGTNASVT GFGNEYDALA SIQPPGSGIG SSAAEALGKK 180
  181 STGKHQSSQW WMEEDGLFNL DDEGRSEKQM CAIAASNVIR NFSFMPDNEV VMAQHRHCLE 240
  241 TVFQCIHDHM TEDEELVTNS LETIVNLAHL MDLRIFSSLK QSYININEKK AVQAVVGILN 300
  301 SSVKAWNCAA AELLGRLIIN PDNEPFISPL IPQIHKRLID LLSIQAVDAQ AAAVGALYNL 360
  361 VEVNMDCRLK LASERWAVDR LLKVIKTPHP VPEVCRKAAM ILENLVSEPQ NRGLLLAYEN 420
  421 AFAELLFQEG KYSDSFARIL YELTARSNSR VASARGIWGM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..460] FFAS03 2.55 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.267627928716605 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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