YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LFR_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKRELGKSG GNSGGSSGPP AKRGRPFGST SANSAAAAAA AAAADAMSPS ALLGPSLLVH  60
   61 NSFVEQNNRR IVLALQSGLK SEVTWALNTL TLLSFKEKED IRRDVMPLAK IAGLLDALLL 120
  121 IIDDWRDIAL PKDLTRGTRV RTLGTNASVT GFGNEYDALA SIQPPGSGIG SSAAEALGKK 180
  181 STGKHQSSQW WMEEDGLFNL DDEGRSEKQM CAIAASNVIR NFSFMPDNEV VMAQHRHCLE 240
  241 TVFQCIHDHM TEDEELVTNS LETIVNLAHL MDLRIFSSLK QSYININEKK AVQAVVGILN 300
  301 SSVKAWNCAA AELLGRLIIN PDNEPFISPL IPQIHKRLID LLSIQAVDAQ AAAVGALYNL 360
  361 VEVNMDCRLK LASERWAVDR LLKVIKTPHP VPEVCRKAAM ILENLVSEPQ NRGLLLAYEN 420
  421 AFAELLFQEG KYSDSFARIL YELTARSNSR VASARGIWGM

Type	Start	End	Confidence
Signal Peptide	1	43	0.60
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	460	0.99