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Protein Overview: SYWC_ARATH

General Information:
Name(s) found: SYWC_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|6175164|gb|AAF04890.1|AC011437_5 putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|15229319|ref|NP_187110.1| tRNA synthetase class I (W and Y) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|145331754|ref|NP_001078104.1| tRNA synthetase class I (W and Y) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110740619|dbj|BAE98413.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • Tryptophan--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At3g04600 PE=2 SV=1 [Swiss-Prot]
  • (Q9SR15) Putative tryptophanyl-tRNA synthetase [athaliana3702.FASTAC.txt]
  • putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana]gi|21436361|gb|AAM51350.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana]gi|19310593|gb|AAL85027.1| putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana]gi|15229319|ref|NP [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 TRNA synthetase class I (W and Y) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tRNA synthetase class I (W and Y) family protein | chr3:1243158-1245964 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative tryptophanyl-tRNA synthetase [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • ATP binding / tRNA ligase/ tryptophan-tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Nucleotidylyl transferase superfamily protein | chr3:1243152-1245958 FORWARD LENGTH=402 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative tryptophanyl-tRNA synthetase OS=Arabidopsis thaliana GN=F7O18.7 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 402 amino acids

    Gene Ontology:
    Cellular Component: cytosol [ISS]
    Biological Process: tRNA aminoacylation for protein translation [ISS]
    tryptophanyl-tRNA aminoacylation [ISS]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    aminoacyl-tRNA ligase activity [IEA][ISS]
    tryptophan-tRNA ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDKKDERE AESSEQVVNP WEVSAKDGGK IDYDKLIDKF GCQRLDESLI DRVQRLTSRQ  60
   61 PHVFLRRSVF FAHRDFNEIL DAYERGDKFY LYTGRGPSSE ALHLGHLIPF MFTKYLQEAF 120
  121 KVPLVIQLTD DEKSIWKNLS VEESQRLARE NAKDIIACGF DVTKTFIFSD FDYVGGAFYK 180
  181 NMVKVGKCVT LNKAMGIFGF SGEDPIAKLS FPPVQAVPSF PSSFPHLFPG KDNLRCLIPC 240
  241 AIDQDPYFRM TRDVAPRLGY SKPALIESTF FPALQGENGK MSASDPNSAI YVTDSAKDIK 300
  301 NKINRYAFSG GQDSIEKHRE LGANLEVDIP VKYLSFFLED DSELEHIKKE YGEGRMLTGE 360
  361 VKKRLTEVLT EIVERHRRAR AAVTDEMVDA FMAVRPLPSM FE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..402] PSI-BLAST 111.0 No description for 2azxA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  5.34430928486195 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.01261843164558 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  1.88984817882585 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.13743634264647 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • binding
    		•  0.27454602748467 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.161799496958314 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle