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Protein Overview: gi|25406686, gi|...

General Information:
Name(s) found: gi|6503282 [NCBI NR]
gi|25406686 [NCBI NR]
gi|15220206 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|6503282|gb|AAF14658.1|AC011713_6 Contains similarity to gb|AF092102 G-protein beta subunit git5p from Schizosaccharomyces pombe and contains 2 PF|00400WD domain, G-beta repeat domains. [Arabidopsis thaliana] [NCBI NR]
  • pir||E96839 hypothetical protein F23A5.6 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220206|ref|NP_178186.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 516 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: response to abscisic acid stimulus [IMP]
    response to water deprivation [IMP]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEYERKRL ENIRRNDEML AALNVRAKAS SLLSAAKRSR DDSKSFKKKK PKPASTPTVI  60
   61 RMSLRTRGLN PDSAGLPDGF SDFRMGSQIT HNQPSPQKQS PRLLAPIPFE SAYEGYGSYT 120
  121 QLVDTLLGIE SKSCRGKLVK GEIGVVKDEN ESPMVRTRSS SRVSKVSVKK EEPEDDSFSD 180
  181 YVNKEFSIPV KPEKIEFDLD LLTLEPQNVA RVVPGRIFVV QFLPCENVKM VAAGDKLGNV 240
  241 GFWNLDCGNE EDNDGIYLFT PHSAPVSSIV FQQNSLSRVI SSSYDGLIRL MDVEKSVFDL 300
  301 VYSTDEAIFS LSQRPNDEQS LYFGQDYGVF NVWDLRAGKS VFHWELHERR INSIDFNPQN 360
  361 PHVMATSSTD GTACLWDLRS MGAKKPKTLS TVNHSRAVHS AYFSPSGLSL ATTSLDNYIG 420
  421 VLSGANFENT CMIYHNNTSR WISKFKAVWG WDDSYIYVGN LSKKIDVINP KLKRTVMELH 480
  481 NPLQRAIPCR IHCHPYNVGT LAGSTAGGQV YVWTTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] MSA 1.299994 View MSA. No confident structure predictions are available.
    2 View Details [91..516] PSI-BLAST 43.69897 Cdc4 F-box and linker domains; Cdc4 propeller domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle