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Protein Overview: HDT2_ARATH

General Information:
Name(s) found: HDT2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|73919940|sp|Q56WH4.2|HDT2_ARATH RecName: Full=Histone deacetylase HDT2; AltName: Full=Histone deacetylase 2b; AltName: Full=HD-tuins protein 2 [NCBI NR]
  • gi|30688577|ref|NP_851056.1| HD2B (HISTONE DEACETYLASE 2B); histone deacetylase [Arabidopsis thaliana] [NCBI NR]
  • gi|21689603|gb|AAM67423.1| AT5g22650/MDJ22_7 [Arabidopsis thaliana] [NCBI NR]
  • gi|19310471|gb|AAL84970.1| AT5g22650/MDJ22_7 [Arabidopsis thaliana] [NCBI NR]
  • gi|16649047|gb|AAL24375.1| histone deacetylase-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10178239|dbj|BAB11671.1| histone deacetylase-like protein [Arabidopsis thaliana] [NCBI NR]
  • Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2 [Swiss-Prot]
  • (Q56WH4) Histone deacetylase 2b (HD-tuins protein 2) [Swiss-Prot]
  • (Q9FNJ6) Histone deacetylase-like protein (AT5g22650/MDJ22_7) [athaliana3702.FASTAC.txt]
  • histone deacetylase-like protein [Arabidopsis thaliana]gi|21689603|gb|AAM67423.1| AT5g22650/MDJ22_7 [Arabidopsis thaliana]gi|19310471|gb|AAL84970.1| AT5g22650/MDJ22_7 [Arabidopsis thaliana]gi|16649047|gb|AAL24375.1| histone deacetylase-like protein [Ar [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Splice Isoform 1 of Histone deacetylase 2b [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HDT02, HDT2, ATHD2B, HDA4, HD2, HD2B | HD2B (HISTONE DEACETYLASE 2B) | chr5:7534123-7536057 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g22650/MDJ22_7 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • histone deacetylase-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • HD2B (HISTONE DEACETYLASE 2B) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Histone deacetylase 2b (HD-tuins protein 2) [nr-271106-contam.fasta]
  • | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2, ATHD2 | histone deacetylase 2B | chr5:7534120-7536054 FORWARD LENGTH=306 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: cell wall [IDA]
    cytosol [IDA]
    nucleolus [IDA][TAS]
    plasma membrane [IDA]
    Biological Process: DNA mediated transformation [IMP]
    negative regulation of transcription [IDA]
    polarity specification of adaxial/abaxial axis [IMP]
    Molecular Function: histone deacetylase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD  60
   61 KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD FTSSDDEDVP EAVPAPAPTA 120
  121 VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE 180
  181 DDSDDDEEED SEDEEEEETP KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE 240
  241 KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG 300
  301 KGKGRA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] FFAS03 1.27 Chromatin decondensation protein 1 (Crp1, Nlp)
    2 View Details [104..179] deduced N/A No confident structure predictions are available.
    3 View Details [180..306] FFAS03 1.04 No description for 2j63A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle