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Protein Overview: UPL5_ARATH

General Information:
Name(s) found: UPL5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75207797|sp|Q9SU29.1|UPL5_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL5; Short=Ubiquitin-protein ligase 5 [NCBI NR]
  • gi|7267959|emb|CAB78300.1| polyubiquitin-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|5823568|emb|CAB41727.2| polyubiquitin-like protein [Arabidopsis thaliana] [NCBI NR]
  • pir||H85134 polyubiquitin-like protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15235410|ref|NP_192994.1| UPL5 (UBIQUITIN PROTEIN LIGASE 5); acid-amino acid ligase/ binding / ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • gi|110738333|dbj|BAF01094.1| polyubiquitin-like protein [Arabidopsis thaliana] [NCBI NR]
  • E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1 [Swiss-Prot]
  • (Q9SU29) POLYUBIQUITIN-like protein [athaliana3702.FASTAC.txt]
  • polyubiquitin-like protein [Arabidopsis thaliana]gi|7267959|emb|CAB78300.1| polyubiquitin-like protein [Arabidopsis thaliana]gi|25407523|pir||H85134 polyubiquitin-like protein [imported] - Arabidopsis thalianagi|15235410|ref|NP_192994.1| ubiquitin-prot [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquitin-protein ligase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: UPL5 | UPL5 (UBIQUITIN PROTEIN LIGASE 5); ubiquitin-protein ligase | chr4:7445582-7448816 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • UPL5; ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • polyubiquitin-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 873 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    Biological Process: protein modification process [ISS]
    senescence [IMP]
    Molecular Function: ubiquitin-protein ligase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSRSSADD STNNANRSYS AVAGTDNKRK RDEDSSDYVG VAESLEMLKK QEIDADHMAA  60
   61 SAQQTLISWR SGENSRSLSS SGECSSSNRP ESTRLQIFVR MMSGGKTIVI HAEKYDTVEK 120
  121 LHQRIEWKTK IPALEQRVIY KGKQLQRENS LTYYSIEQDA SLQLVARMQS TEHPVAWQTI 180
  181 DDIMYTISRM YKGENLQSNI NEKIVTFFAM IPVESDESIA KYLNIFSNSS VPAALVMLYA 240
  241 SSLERNKSCA KSSVKLFLSN CVALPKNQKN YCLPIVLEFC KLLRKVCPDQ KLYVTCRNTL 300
  301 GSMLETFDNP HGVYNDQYET FGVEIFPFFT ELTGLLLNEL AQNSGPSFCD FQKVSSFWQQ 360
  361 LRKVIELKVA FPIPIVLPMQ STALEAEIRH LHRLFGSLLT TMDLCMCRVE SSLADKEVGN 420
  421 SETMSSSWSQ YLSILKIINS MSNIYQGAKG QLAVMLNKNK VSFSALVVKF AKRGDDHQWI 480
  481 FEYKEATNFE ARRHLAMLLF PDVKEDFEEM HEMLIDRSNL LSESFEYIVG ASPEALHGGL 540
  541 FMEFKNEEAT GPGVLREWFY LVCQEIFNPK NTLFLRSADD FRRFSPNPAS KVDPLHPDFF 600
  601 EFTGRVIALA LMHKVQVGVL FDRVFFLQLA GLKISLEDIK DTDRIMYNSC KQILEMDPEF 660
  661 FDSNAGLGLT FVLETEELGK RDTIELCPDG KLKAVNSKNR KQYVDLLIER RFATPILEQV 720
  721 KQFSRGFTDM LSHSVPPRSF FKRLYLEDLD GMLRGGENPI SIDDWKAHTE YNGFKETDRQ 780
  781 IDWFWKILKK MTEEEQRSIL FFWTSNKFVP VEGFRGLSSK LYIYRLYEAN DRLPLSHTCF 840
  841 YRLCIPRYPT ITLMEQRLRL IAQDHVSSSF GKW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] PSI-BLAST 20.09691 No description for 2ojrA was found.
    2 View Details [91..156] PSI-BLAST 18.09691 X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin
    3 View Details [157..239] deduced N/A No confident structure predictions are available.
    4 View Details [240..473] deduced N/A No confident structure predictions are available.
    5 View Details [474..873] PSI-BLAST 116.0 Regulation of Smurf2 Ubiquitin Ligase Activity by Anchoring the E2 to the HECT domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle