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Protein Overview: NCED9_ARATH

General Information:
Name(s) found: NCED9_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 657 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    Biological Process: abscisic acid biosynthetic process [TAS]
    Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity [IDA][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST  60
   61 STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV SSSVNKKSSV SSSLQSPTFK 120
  121 PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA 180
  181 VQIAGNFFPV PEKPVVHNLP VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV 240
  241 RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP 300
  301 TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI 360
  361 DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD QPTMIHDFAI TENFVVIPDQ 420
  421 QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE 480
  481 TDEVVVIGSC MTPPDSIFNE HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR 540
  541 NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG 600
  601 GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] MSA 24.156997 View MSA. No confident structure predictions are available.
    2 View Details [165..657] PSI-BLAST 117.0 Crystal structure of apocarotenoid cleavage oxygenase from Synechocystis, native enzyme


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle