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Protein Overview: gi|3128167, gi|1...

General Information:
Name(s) found: gi|7486488 [NCBI NR]
gi|3128167 [NCBI NR]
gi|21360459 [NCBI NR]
gi|20197069 [NCBI NR]
gi|18406480 [NCBI NR]
gi|15010704 [NCBI NR]
Description(s) found:
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  • pir||T02376 hypothetical protein At2g44200 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|3128167|gb|AAC16071.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|21360459|gb|AAM47345.1| At2g44200/F6E13.34 [Arabidopsis thaliana] [NCBI NR]
  • gi|20197069|gb|AAM14905.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18406480|ref|NP_566014.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15010704|gb|AAK74011.1| At2g44200/F6E13.34 [Arabidopsis thaliana] [NCBI NR]
  • (O64855) At2g44200 protein (At2g44200/F6E13.34) (Expressed protein) [athaliana3702.FASTAC.txt]
  • At2g44200/F6E13.34 [Arabidopsis thaliana]gi|3128167|gb|AAC16071.1| expressed protein [Arabidopsis thaliana]gi|20197069|gb|AAM14905.1| expressed protein [Arabidopsis thaliana]gi|15010704|gb|AAK74011.1| At2g44200/F6E13.34 [Arabidopsis thaliana]gi|748648 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44195.1); similar to hypothetical protein OsJ_026713 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43230.1); similar to hypothetical protein OsI_028740 [Oryza sativa (indica culti [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At2g44200/F6E13.34 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44195.1); similar to hypothetical protein OsJ_026713 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43230.1); similar to hypothetical protein OsI_028740 [Oryza sativa (indica cultivar-group)] (GB:EAZ07508.1); similar to Os08g0500200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062154.1); contains domain PTHR16196 (PTHR16196) | chr2:18283378-18285316 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor | chr2:18276302-18278240 FORWARD LENGTH=493 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g44200/F6E13.34 OS=Arabidopsis thaliana GN=At2g44200 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 493 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMKFLNKKG WHTGSLRNIE TVWKAEQKQE AEQKKLEELR LQILQERERS EFRALQEQAG  60
   61 LIPRQERLEF LYDSGLAVGK GSASGSGVSF QKEEQPLAKS EAGSSASEKP DQSAPGALFE 120
  121 EKAQSANDSW RKLHSDPLLL IRQREQEALA KIKNNPVKMA LIRKSVEEKG KGKDGDTKEH 180
  181 KKKHKRKSGK HQKQSSSRQR SDSEEDSGEE NNGRKSHHQK TSGTHDRHYE RPRSDLEDES 240
  241 KGRESRDRHY EKRRSELDDG HKRRERHDTH YERRRSEMDD ESKRRESRDN HYERRRSDLD 300
  301 DESKRRESHD KHFERQRSDL DDEYKRRESQ DKRRRSDIDD EPKRRDARPN EKYRNRSPKG 360
  361 GVERENLKSY GQEDKKRKAE DLDSGKPNEY QNRRRKGGSK LSEEERAARL KQMQMDAEVH 420
  421 EEQRWTRLKK ADETDAVEAD KNKVSTGKSF LDDANKSVYG VEKGGSSTIE ESVRRRSYYS 480
  481 QRGTAAEGNA FRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..382] PSI-BLAST 5.69897 Heavy meromyosin subfragment
    2 View Details [383..493] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle