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View Structure Prediction Details

Protein: gi|3128167, gi|1...
Organism: Arabidopsis thaliana
Length: 493 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3128167, gi|1....

Description E-value Query
Range
Subject
Range
gi|7549210 - gi|7549210|gb|AAF63787.1|AF142406_1 200 kDa antigen p200 [Babesia bigemina]
199.0 [0..4] [492..193]

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Predicted Domain #1
Region A:
Residues: [1-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMKFLNKKG WHTGSLRNIE TVWKAEQKQE AEQKKLEELR LQILQERERS EFRALQEQAG  60
   61 LIPRQERLEF LYDSGLAVGK GSASGSGVSF QKEEQPLAKS EAGSSASEKP DQSAPGALFE 120
  121 EKAQSANDSW RKLHSDPLLL IRQREQEALA KIKNNPVKMA LIRKSVEEKG KGKDGDTKEH 180
  181 KKKHKRKSGK HQKQSSSRQR SDSEEDSGEE NNGRKSHHQK TSGTHDRHYE RPRSDLEDES 240
  241 KGRESRDRHY EKRRSELDDG HKRRERHDTH YERRRSEMDD ESKRRESRDN HYERRRSDLD 300
  301 DESKRRESHD KHFERQRSDL DDEYKRRESQ DKRRRSDIDD EPKRRDARPN EKYRNRSPKG 360
  361 GVERENLKSY GQEDKKRKAE DL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [383-493]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGKPNEYQN RRRKGGSKLS EEERAARLKQ MQMDAEVHEE QRWTRLKKAD ETDAVEADKN  60
   61 KVSTGKSFLD DANKSVYGVE KGGSSTIEES VRRRSYYSQR GTAAEGNAFR R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle