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Protein Overview: NCED6_ARATH

General Information:
Name(s) found: NCED6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75273785|sp|Q9LRM7.1|NCED6_ARATH RecName: Full=9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic; Short=AtNCED6; Flags: Precursor [NCBI NR]
  • gi|15230080|ref|NP_189064.1| NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6); 9-cis-epoxycarotenoid dioxygenase [Arabidopsis thaliana] [NCBI NR]
  • gi|11994241|dbj|BAB01363.1| 9-cis-epoxycarotenoid dioxygenase [Arabidopsis thaliana] [NCBI NR]
  • 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1 [Swiss-Prot]
  • (Q9LRM7) 9-cis-epoxycarotenoid dioxygenase [athaliana3702.FASTAC.txt]
  • 9-cis-epoxycarotenoid dioxygenase [Arabidopsis thaliana]gi|15230080|ref|NP_189064.1| 9-cis-epoxycarotenoid dioxygenase, putative / neoxanthin cleavage enzyme, putative / carotenoid cleavage dioxygenase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 9-cis-epoxycarotenoid dioxygenase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATNCED6, NCED6 | NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) | chr3:8761446-8763179 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 9-cis-epoxycarotenoid dioxygenase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nced6 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid dioxygenase 6 | chr3:8761439-8763172 FORWARD LENGTH=577 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 577 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: response to red or far red light [IEP]
    abscisic acid biosynthetic process [TAS]
    response to red light [IEP]
    Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity [IDA][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY  60
   61 PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ LSGNFAPVNE CPVQNGLEVV 120
  121 GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ 180
  181 ETALGRSVFP KPIGELHGHS GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM 240
  241 SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR 300
  301 YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE 360
  361 KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE EGDPVIVVIG SCMSPPDTIF 420
  421 SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP 480
  481 KCSGIAKVDI QNGTVSEFNY GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV 540
  541 VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] deduced N/A No confident structure predictions are available.
    2 View Details [93..577] PSI-BLAST 121.0 Crystal structure of apocarotenoid cleavage oxygenase from Synechocystis, native enzyme


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle