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Protein Overview: ATL12_ARATH

General Information:
Name(s) found: ATL12_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|68565334|sp|Q9SL78.1|ATL2D_ARATH RecName: Full=Putative RING-H2 finger protein ATL2D; AltName: Full=RING-H2 finger protein ATL12; Flags: Precursor [NCBI NR]
  • gi|4580469|gb|AAD24393.1| putative RING zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • pir||B84584 probable RING zinc finger protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15225285|ref|NP_179593.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] [NCBI NR]
  • Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1 [Swiss-Prot]
  • Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=3 SV=1 [Swiss-Prot]
  • (Q9SL78) Putative C3HC4-type RING zinc finger protein [athaliana3702.FASTAC.txt]
  • putative RING zinc finger protein [Arabidopsis thaliana]gi|25411956|pir||B84584 probable RING zinc finger protein [imported] - Arabidopsis thalianagi|15225285|ref|NP_179593.1| zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative RING-H2 finger protein ATL2D precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr2:8654894-8656066 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative RING zinc finger protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative RING-H2 finger protein ATL2D precursor (RING-H2 finger protein ATL12) [nr-271106-contam.fasta]
  • protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RING/U-box superfamily protein | chr2:8647813-8648985 FORWARD LENGTH=390 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 390 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: NONE FOUND
    Molecular Function: zinc ion binding [IEA][ISS]
    protein binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV  60
   61 YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD KKAIESLPFF RFSALKGLKQ 120
  121 GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN 180
  181 SSTSLRILNQ SETREEDSRL EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE 240
  241 KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK 300
  301 EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL 360
  361 WLPIARRTAQ WFVNREKSND LNTTRQNLNV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..113] deduced N/A No confident structure predictions are available.
    2 View Details [114..187] PSI-BLAST 9.522879 EL5 RING-H2 domain
    3 View Details [188..390] PSI-BLAST 5.69897 Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle