YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV  60
   61 YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD KKAIESLPFF RFSALKGLKQ 120
  121 GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN 180
  181 SSTSLRILNQ SETREEDSRL EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE 240
  241 KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK 300
  301 EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL 360
  361 WLPIARRTAQ WFVNREKSND LNTTRQNLNV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.68
Transmembrane Helix	7	23	0.63
Non-Cytoplasmic	24	40	0.73
Transmembrane Helix	41	62	0.78
Cytoplasmic	63	390	0.67