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Protein Overview: gi|8978336, gi|1...

General Information:
Name(s) found: gi|8978336 [NCBI NR]
gi|15238939 [NCBI NR]
Description(s) found:
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  • gi|8978336|dbj|BAA98189.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15238939|ref|NP_199643.1| DC1 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9LK82) Similarity to CHP-rich zinc finger protein [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15238939|ref|NP_199643.1| DC1 domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DC1 domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DC1 domain-containing protein | chr5:19599020-19601953 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr5:19581794-19584727 REVERSE LENGTH=977 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Cysteine/histidine-rich C1 domain-containing protein OS=Arabidopsis thaliana GN=At5g48320 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 977 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNSNPESE LKSLIFQIYS LSVGLNPDSY LDPDWDSISK MIPLITQTIS LVSSMDFDSQ  60
   61 PGSRLMSLTN QAIYVFNSMD FDSQPDSLRK LIALFSHKLS LVNSTEFISE QDTNSQPDLE 120
  121 FFVLLIRELC SPTPEPPELI SLISQIIDEV VCWKPQPELV RDLEPEPEPE PEPEPEINLG 180
  181 LKIISLITQL ISQPISLSIK TSLIPQIISM VSKIDLDAQP ETEMMSLTTQ AVSLFNSMDL 240
  241 GSQPDPLRKL ISLISGEISH VKSVSVLKRE QDPELRHSAG SLLRVPRGLY RNCHPEIDTG 300
  301 TKLLKQDSNS GTYSNIEHLE MDLNIEHLEM DSNSDTYVYI KLSELDSDLD IEFDLEADPD 360
  361 LFFRYFKRVS LDSYLISLVG ETLSLEPQPE LISLIYQIFS LVVSMYSEWK RLIFLYPQVQ 420
  421 VKLKKGKFQV IDEEVSWSSN GKWKCLPFNW EKIWISEEGV SHIRCQTCNG ENHGEYEKAP 480
  481 VVIKHTLHPK HSLQLVLLNG DTTRECYCCD KDLEEVFYYC SACDYAMNIA CIKRTRVLSL 540
  541 DQPKWHEHTL AQFPRKTSLT CNVCALTHSS CPFYMCPPCD FVVHQKCISL PRVIRISRHF 600
  601 HRIHFTPSFD QEVRCCGVCR RKIDNDYGGY SCNKDGCWYA AHSKCATQSN VWDGKELEGE 660
  661 PEEDIKKIEP FVTVRDGIIR HFSHDHHHLK LDENIDRDYN ENKLCQACIT PIYFGNFYSC 720
  721 MQCDFILHEE CAKLSRKIHH PVHPHLLTLV GRSDLVMDAT KSCSICSWRC TTGFFYECSE 780
  781 RECRFKVHVQ CATISEPLVH ASHMDPLFLT SKPGEERRCC VCKELGHCST NETFNCIECD 840
  841 FALCFKCATL PQKVRYKHDK HMLTLSYGEE TSTMTYWCEV CEKKINPKER FYMCDEYCCV 900
  901 TLHIECMLGV DLYMKSGSFW LYCSSKVSVL PNNHHMSRPI CSFCKKRCPH NIVFQCLGLI 960
  961 SCSTSCIRVK DSKKMTM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] MSA 2.081994 View MSA. No confident structure predictions are available.
    2 View Details [240..425] deduced N/A No confident structure predictions are available.
    3 View Details [426..549] MSA 2.490997 View MSA. No confident structure predictions are available.
    4 View Details [550..627] deduced N/A No confident structure predictions are available.
    5 View Details [628..831] PSI-BLAST 49.0 No description for 2i13A was found.
    6 View Details [832..977] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle