YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|8978336, gi|1...
Organism: Arabidopsis thaliana
Length: 977 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|8978336, gi|1....

Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNSNPESE LKSLIFQIYS LSVGLNPDSY LDPDWDSISK MIPLITQTIS LVSSMDFDSQ  60
   61 PGSRLMSLTN QAIYVFNSMD FDSQPDSLRK LIALFSHKLS LVNSTEFISE QDTNSQPDLE 120
  121 FFVLLIRELC SPTPEPPELI SLISQIIDEV VCWKPQPELV RDLEPEPEPE PEPEPEINLG 180
  181 LKIISLITQL ISQPISLSIK TSLIPQIISM VSKIDLDAQP ETEMMSLTTQ AVSLFNSMD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [240-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGSQPDPLRK LISLISGEIS HVKSVSVLKR EQDPELRHSA GSLLRVPRGL YRNCHPEIDT  60
   61 GTKLLKQDSN SGTYSNIEHL EMDLNIEHLE MDSNSDTYVY IKLSELDSDL DIEFDLEADP 120
  121 DLFFRYFKRV SLDSYLISLV GETLSLEPQP ELISLIYQIF SLVVSMYSEW KRLIFLYPQV 180
  181 QVKLKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [426-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKFQVIDEEV SWSSNGKWKC LPFNWEKIWI SEEGVSHIRC QTCNGENHGE YEKAPVVIKH  60
   61 TLHPKHSLQL VLLNGDTTRE CYCCDKDLEE VFYYCSACDY AMNIACIKRT RVLSLDQPKW 120
  121 HEHT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [550-627]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAQFPRKTSL TCNVCALTHS SCPFYMCPPC DFVVHQKCIS LPRVIRISRH FHRIHFTPSF  60
   61 DQEVRCCGVC RRKIDNDY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [628-831]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGYSCNKDGC WYAAHSKCAT QSNVWDGKEL EGEPEEDIKK IEPFVTVRDG IIRHFSHDHH  60
   61 HLKLDENIDR DYNENKLCQA CITPIYFGNF YSCMQCDFIL HEECAKLSRK IHHPVHPHLL 120
  121 TLVGRSDLVM DATKSCSICS WRCTTGFFYE CSERECRFKV HVQCATISEP LVHASHMDPL 180
  181 FLTSKPGEER RCCVCKELGH CSTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.0
Match: 2i13A
Description: No description for 2i13A was found.

Predicted Domain #6
Region A:
Residues: [832-977]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETFNCIECDF ALCFKCATLP QKVRYKHDKH MLTLSYGEET STMTYWCEVC EKKINPKERF  60
   61 YMCDEYCCVT LHIECMLGVD LYMKSGSFWL YCSSKVSVLP NNHHMSRPIC SFCKKRCPHN 120
  121 IVFQCLGLIS CSTSCIRVKD SKKMTM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle