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Protein Overview: SCL13_ARATH

General Information:
Name(s) found: SCL13_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75181621|sp|Q9M0M5.1|SCL13_ARATH RecName: Full=Scarecrow-like protein 13; Short=AtSCL13; AltName: Full=GRAS family protein 24; Short=AtGRAS-24 [NCBI NR]
  • gi|7268475|emb|CAB78726.1| scarecrow-like 13 (SCL13) [Arabidopsis thaliana] [NCBI NR]
  • gi|15236009|ref|NP_193456.1| SCL13 (SCARECROW-LIKE 13); transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1 [Swiss-Prot]
  • (Q9M0M5) Scarecrow-like 13 (SCL13) [athaliana3702.FASTAC.txt]
  • scarecrow-like 13 (SCL13) [Arabidopsis thaliana]gi|15236009|ref|NP_193456.1| scarecrow-like transcription factor 13 (SCL13) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: SCL13 | SCL13 (SCARECROW-LIKE 13); transcription factor | chr4:9661405-9662268 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • scarecrow-like 13 (SCL13) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 287 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription [TAS]
    response to chitin [IEP]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSVSGSPIQ RLGTYMAEGL RARLEGSGSN IYKSLKCNEP TGRELMSYMS VLYEICPYWK  60
   61 FAYTTANVEI LEAIAGETRV HIIDFQIAQG SQYMFLIQEL AKHPGGPPLL RVTGVDDSQS 120
  121 TYARGGGLSL VGERLATLAQ SCGVPFEFHD AIMSGCKVQR EHLGLEPGFA VVVNFPYVLH 180
  181 HMPDESVSVE NHRDRLLHLI KSLSPKLVTL VEQESNTNTS PFLSRFVETL DYYTAMFESI 240
  241 DAARPRDDKQ RISAEQHCVA RDIVNMIACE ESERVERHEV LGNGGSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..74] MSA 5.086994 View MSA. No confident structure predictions are available.
    2 View Details [75..287] MSA 6.087975 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle