Protein Overview: OCT6_ARATH

General Information:
Name(s) found:	OCT6_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|4966358\|gb\|AAD34689.1\|AC006341_17 Is a member of the PF\|00083 sugar transporter family. [Arabidopsis thaliana] [NCBI NR] pir\|\|H86298 hypothetical protein F3O9.17 - Arabidopsis thaliana [NCBI NR] gi\|15219222\|ref\|NP_173087.1\| OCT6 (ORGANIC CATION/CARNITINE TRANSPORTER 6); carbohydrate transmembrane transporter/ sugar:hydrogen symporter [Arabidopsis thaliana] [NCBI NR] gi\|110738583\|dbj\|BAF01217.1\| putative transport protein [Arabidopsis thaliana] [NCBI NR] Organic cation/carnitine transporter 6 OS=Arabidopsis thaliana GN=OCT6 PE=2 SV=1 [Swiss-Prot] (Q9SA36) F3O9.17 protein [athaliana3702.FASTAC.txt] Is a member of the PF\|00083 sugar transporter family. [Arabidopsis thaliana]gi\|25518750\|pir\|\|H86298 hypothetical protein F3O9.17 - Arabidopsis thalianagi\|15219222\|ref\|NP_173087.1\| transporter-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Transporter-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: ATOCT6 \| ATOCT6; carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter \| chr1:5596756-5598321 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] Is a member of the PF\|00083 sugar transporter family. [Arabidopsis thaliana] [nr-271106-contam.fasta] carbohydrate transporter/ sugar porter [Arabidopsis thaliana] [nr-271106-contam.fasta] putative transport protein [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: ATOCT6, OCT6 \| organic cation/carnitine transporter 6 \| chr1:5596762-5598327 FORWARD LENGTH=521 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	521 amino acids
Gene Ontology:
Cellular Component:	membrane [ISS]
Biological Process:	NONE FOUND
Molecular Function:	carbohydrate transmembrane transporter activity [ISS] sugar:hydrogen symporter activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPISEPLL SHLTDDSGVN EKTRLEALTF DKIVEQSLSD FGFWQFFQIS LVGLALLFDA  60
   61 QQIFITVYTD AYPTWHCLNH TICDPSASDI CKLPRSAWEW DGGSQGKSVI SEFGLECSSS 120
  121 LLRGMPSSAF YIGAIVGGFF LALIPDDSLG RKKLVLFSTF AMSITSISVI FSTNVWIYTF 180
  181 LKFIIGFSRS QTWSYALVLI SERVSTRWRP RATMIPFTLF VLGFMSLSGI AFLAQDSSWR 240
  241 YLYLYTSVPA VFYCIFLYLF ALESPRWLHM QGKDKEAIDV LTKMSPKEKA YLESVVSKLP 300
  301 LKQENFEQAP TYSIKDFFFR KWAFRRILVV MIIMFGLGIS YYGVPLAARD IDVNIYLSET 360
  361 LNALVELPTF VITPILLERF NRRSSVLVNT LLGGASGVLC FVLSILGKTE IAFAFELGTF 420
  421 FCARIGFNLM AVFMVEMFPT CVRSSATMMF RQALVVGGAC CPLIASIGRY IPSVSFAIFG 480
  481 IAMSGLGMFV LILPETKGLS LCDSMEEQEK RDQAVNTSHV C

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

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Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	5.46247398538901	bayes_pls_golite062009
ion transmembrane transporter activity	4.58978526526921	bayes_pls_golite062009
cation transmembrane transporter activity	4.31967711223954	bayes_pls_golite062009
transporter activity	4.09176719149278	bayes_pls_golite062009
anion transmembrane transporter activity	3.94605227012838	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
organic anion transmembrane transporter activity	3.3413526350788	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	2.52916479889426	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
organic acid transmembrane transporter activity	1.24937104052238	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
binding	0.805286077372817	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
phosphate transmembrane transporter activity	0.312628600969375	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..521]	PSI-BLAST	27.09691	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

Protein Overview: OCT6_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: