YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCT6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.84
Transmembrane Helix	43	65	0.61
Non-Cytoplasmic	66	126	0.68
Transmembrane Helix	127	144	0.94
Cytoplasmic	145	153	0.61
Transmembrane Helix	154	177	0.84
Non-Cytoplasmic	178	179	0.46
Transmembrane Helix	180	200	0.62
Cytoplasmic	201	212	0.84
Transmembrane Helix	213	234	0.94
Non-Cytoplasmic	235	240	0.91
Transmembrane Helix	241	262	0.93
Cytoplasmic	263	322	0.99
Transmembrane Helix	323	344	0.89
Non-Cytoplasmic	345	354	0.81
Transmembrane Helix	355	377	0.87
Cytoplasmic	378	385	0.89
Transmembrane Helix	386	407	0.93
Non-Cytoplasmic	408	416	0.68
Transmembrane Helix	417	435	0.90
Cytoplasmic	436	447	0.76
Transmembrane Helix	448	468	0.89
Non-Cytoplasmic	469	473	0.73
Transmembrane Helix	474	493	0.92
Cytoplasmic	494	521	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPISEPLL SHLTDDSGVN EKTRLEALTF DKIVEQSLSD FGFWQFFQIS LVGLALLFDA  60
   61 QQIFITVYTD AYPTWHCLNH TICDPSASDI CKLPRSAWEW DGGSQGKSVI SEFGLECSSS 120
  121 LLRGMPSSAF YIGAIVGGFF LALIPDDSLG RKKLVLFSTF AMSITSISVI FSTNVWIYTF 180
  181 LKFIIGFSRS QTWSYALVLI SERVSTRWRP RATMIPFTLF VLGFMSLSGI AFLAQDSSWR 240
  241 YLYLYTSVPA VFYCIFLYLF ALESPRWLHM QGKDKEAIDV LTKMSPKEKA YLESVVSKLP 300
  301 LKQENFEQAP TYSIKDFFFR KWAFRRILVV MIIMFGLGIS YYGVPLAARD IDVNIYLSET 360
  361 LNALVELPTF VITPILLERF NRRSSVLVNT LLGGASGVLC FVLSILGKTE IAFAFELGTF 420
  421 FCARIGFNLM AVFMVEMFPT CVRSSATMMF RQALVVGGAC CPLIASIGRY IPSVSFAIFG 480
  481 IAMSGLGMFV LILPETKGLS LCDSMEEQEK RDQAVNTSHV C