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Protein Overview: gi|145361138, gi...

General Information:
Name(s) found: gi|145361138 [NCBI NR]
gi|10178028 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|145361138|ref|NP_680142.2| ATP binding / ATP-dependent helicase/ double-stranded RNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • gi|10178028|dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1161 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IEA]
    intracellular [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA][ISS]
    ATP binding [IEA][ISS]
    double-stranded RNA binding [IEA]
    ATP-dependent helicase activity [IEA]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP  60
   61 IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK LGILLANDSE QEIVSRDKRD 120
  121 RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG 180
  181 LLQEHLDSQQ LSSGKANECV ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM 240
  241 QRTWQESPEG RTMLEFRKTL PSFKDKERLL QAIARNQVIV VSGETGCGKT TQLPQYILES 300
  301 EIESGRGAFC NIICTQPRRI SAMAVSERVS AERGEPLGET VGFKVRLEGM RGKNTHLLFC 360
  361 TSGILLRRLL SDRNLNGVTH VFVDEIHERG MNEDFLIIVL KELLPRRPDL RLVLMSATLN 420
  421 AELFSNYYGG APTIHIPGFT HPVKAHFLED VLEITGYKLT SFNQVDDYGQ EKTWKTQKQL 480
  481 MPRKRKNQIT TLVEEALSKS NFESYNSRTR DSLSSWMPDC IGFNLIEAVL CHICRKERPG 540
  541 AVLVFLTGWD DIRSLSDQIK AHPLLGDPNR VLLLMCHGSM ATAEQRLIFE RAPPNIRKIV 600
  601 LATNMAEASI TINDVVFVVD CGKAKETTYD ALNNTPCLLP SWISQASARQ RRGRAGRLFP 660
  661 GECYHLYPKC VYDAFAEYQL PELLRTPLNS LCLQIKSLQV ESIAEFLSAA LQAPESLAVQ 720
  721 NAIGFLKMIG ALDEKENLTD LGKLLSILPV DPKLGKMLIM GAIFRCFDPI LTIVSGLSVR 780
  781 DPFLLPQDKK DLALSAKLRF SAKDYSDHMA LVRAFEGWKD AEREGSAYEF CWRNFLSAQT 840
  841 LQAIHSLRKQ FNYILKEAGL VHDDLALNNK LSHNQSLVRA VICSGLFPGI ASVVHRETSM 900
  901 SFKTMDDGQV SLYANSVNSR FPTIPYPWLV FGEKVKVNAV LIRDSTGVPD SSLILFGGSL 960
  961 STGVQVGHLK MLDGYIDFFM DPNLAESYVK LKEELDKLLQ KKLEDPSMDI HKEGKYLMLA1020
 1021 VQELVAGDQC EGRFVFGRDT KRPSQPQIGE NKHSKDGTNP KSLLQTLLMR AGHSPPKYKT1080
 1081 KHLKTNEFRA LVEFKGMQFV GKPQRNKTLA EKDAAVEALA WLTHTSDNST GQHNEDADSP1140
 1141 PDVTDNMLKL LGGRRRRSKG K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] deduced N/A No confident structure predictions are available.
    2 View Details [247..871] PSI-BLAST 19.045757 No description for 2p6rA was found.
    3 View Details [872..1032] MSA 3.655992 View MSA. No confident structure predictions are available.
    4 View Details [1033..1161] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.44

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle