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View Structure Prediction Details

Protein: gi|145361138, gi...
Organism: Arabidopsis thaliana
Length: 1161 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|145361138, gi....

Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFTKRISLF LGQTTRIHSR SLLGNPTLCR SYIVGPVSTS SPAFLISSRN GDGVTGLYYP  60
   61 IRRRFIGHTA EQFSDDEYEC EFEEHKASSS VANVDEWKWK LGILLANDSE QEIVSRDKRD 120
  121 RRDYEQISNL AKRMGLYSEI YGKVVVASKV PLPNYRPDLD DKRPQREVVL PLSLQRRVEG 180
  181 LLQEHLDSQQ LSSGKANECV ADSQPPKQTE ELPDENSDSF LDGSVMEKVL QRRSMRMRNM 240
  241 QRTWQE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [247-871]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPEGRTMLEF RKTLPSFKDK ERLLQAIARN QVIVVSGETG CGKTTQLPQY ILESEIESGR  60
   61 GAFCNIICTQ PRRISAMAVS ERVSAERGEP LGETVGFKVR LEGMRGKNTH LLFCTSGILL 120
  121 RRLLSDRNLN GVTHVFVDEI HERGMNEDFL IIVLKELLPR RPDLRLVLMS ATLNAELFSN 180
  181 YYGGAPTIHI PGFTHPVKAH FLEDVLEITG YKLTSFNQVD DYGQEKTWKT QKQLMPRKRK 240
  241 NQITTLVEEA LSKSNFESYN SRTRDSLSSW MPDCIGFNLI EAVLCHICRK ERPGAVLVFL 300
  301 TGWDDIRSLS DQIKAHPLLG DPNRVLLLMC HGSMATAEQR LIFERAPPNI RKIVLATNMA 360
  361 EASITINDVV FVVDCGKAKE TTYDALNNTP CLLPSWISQA SARQRRGRAG RLFPGECYHL 420
  421 YPKCVYDAFA EYQLPELLRT PLNSLCLQIK SLQVESIAEF LSAALQAPES LAVQNAIGFL 480
  481 KMIGALDEKE NLTDLGKLLS ILPVDPKLGK MLIMGAIFRC FDPILTIVSG LSVRDPFLLP 540
  541 QDKKDLALSA KLRFSAKDYS DHMALVRAFE GWKDAEREGS AYEFCWRNFL SAQTLQAIHS 600
  601 LRKQFNYILK EAGLVHDDLA LNNKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.045757
Match: 2p6rA
Description: No description for 2p6rA was found.

Predicted Domain #3
Region A:
Residues: [872-1032]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHNQSLVRAV ICSGLFPGIA SVVHRETSMS FKTMDDGQVS LYANSVNSRF PTIPYPWLVF  60
   61 GEKVKVNAVL IRDSTGVPDS SLILFGGSLS TGVQVGHLKM LDGYIDFFMD PNLAESYVKL 120
  121 KEELDKLLQK KLEDPSMDIH KEGKYLMLAV QELVAGDQCE G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [1033-1161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFVFGRDTKR PSQPQIGENK HSKDGTNPKS LLQTLLMRAG HSPPKYKTKH LKTNEFRALV  60
   61 EFKGMQFVGK PQRNKTLAEK DAAVEALAWL THTSDNSTGQ HNEDADSPPD VTDNMLKLLG 120
  121 GRRRRSKGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle