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Protein Overview: SM3L3_ARATH

General Information:
Name(s) found: SM3L3_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|60390960|sp|Q9FIY7.1|SM3L3_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Short=SMARCA3-like protein 3 [NCBI NR]
  • gi|15239896|ref|NP_199166.1| SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10178192|dbj|BAB11616.1| DNA repair protein-like [Arabidopsis thaliana] [NCBI NR]
  • Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 [Swiss-Prot]
  • (Q9FIY7) DNA repair protein-like [athaliana3702.FASTAC.txt]
  • DNA repair protein-like [Arabidopsis thaliana]gi|15239896|ref|NP_199166.1| SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein | chr5:17506555-17512058 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding / protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA repair protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 (SMARCA3-like protein 3) [nr-271106-contam.fasta]
  • | Symbols: | Helicase protein with RING/U-box domain | chr5:17489327-17494830 FORWARD LENGTH=1277 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1277 amino acids

    Gene Ontology:
    Cellular Component: chloroplast envelope [IDA]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA][ISS]
    ATP binding [IEA][ISS]
    zinc ion binding [IEA][ISS]
    protein binding [IEA][ISS]
    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [IEA]
    ATP-dependent helicase activity [IEA]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVDDAEMR LTESEAVSSS DDRKIVADTP DFIDESSLVI RTTTGVRISA LPAEQSLVDS  60
   61 DGSNSEVTLP AKDEVISDGF TCVNKEIVES DSFREQNLEI GEPDLDVENR KEAMIIDSIE 120
  121 NSVVEIVSSA SGDDCNVKVE VVEPELLVEN LVVAKEEEEM IVDSIEDSVV EIVSTASGCD 180
  181 CNVKVEVVDP ELCVDNLVVV KEEEMIADSI AESVVETVSR GLDYECVDVK VKEEPDLGTK 240
  241 LEEDSVFPNV LEKKDEVIKV LEDQPSEINK KLEQENDDLF SSGDSDGTSA KRRKMEMESY 300
  301 APVGVESCIL APTPLRVVKP EKLDTPEVID LESEKSYTHV KMEPVEEIKV EAVKMSSQVE 360
  361 DVKFSREQKS VYVKKEPVGA RKVKVEDGDF PVEKDWYLVG RSLVTATSTS KGRKLEDNEI 420
  421 VNFTFSSVAK WKVPNIVRFS TKRCGEIGRL PMEWSNWAVS LLRSGKVKML GRCVAAPPFL 480
  481 TMMQEIMLYV SFYIHSSIFT DVSKSTWRIG SSPNLESTLH PLLQLFKHLT IKPYQKAEFT 540
  541 PEELNSRKRS LNLEDDYDER AALLAIAKRR KGCQQSLEQN KDEEEAPESY MNRVVGAADS 600
  601 YNLEEMEAPS TLTCNLRPYQ KQALYWMSES EKGIDVEKAA ETLHPCWEAY RICDERAPSI 660
  661 YLNIFSGEAT IQFPTATQMA RGGILADAMG LGKTVMTIAL ILARPGRGNP ENEDVLVADV 720
  721 NADKRNRKEI HMALTTVKAK GGTLIICPMA LLSQWKDELE THSKPDTVSV LVYYGGDRTH 780
  781 DAKAIASHDV VLTTYGVLTS AYKQDMANSI FHRIDWYRIV LDEAHTIKSW KTQAAKATFE 840
  841 LSSHCRWCLT GTPLQNKLED LYSLLCFLHV EPWCNWAWWS KLIQKPYENG DPRGLKLIKA 900
  901 ILRPLMLRRT KETRDKEGSL ILELPPTDVQ VIECEQSEAE RDFYTALFKR SKVQFDQFVA 960
  961 QGKVLHNYAN ILELLLRLRQ CCNHPFLVMS RADSQQYADL DSLARRFLDN NPDSVSQNAP1020
 1021 SRAYIEEVIQ DLRDGNSKEC PICLESADDP VLTPCAHRMC RECLLTSWRS PSCGLCPICR1080
 1081 TILKRTELIS CPTDSIFRVD VVKNWKESSK VSELLKCLEK IKKSGSGEKS IVFSQWTSFL1140
 1141 DLLEIPLRRR GFEFLRFDGK LAQKGREKVL KEFNETKQKT ILLMSLKAGG VGLNLTAASS1200
 1201 VFLMDPWWNP AVEEQAIMRI HRIGQKRTVF VRRFIVKDTV EERMQQVQAR KQRMIAGALT1260
 1261 DEEVRSARLE ELKMLFR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] deduced N/A No confident structure predictions are available.
    2 View Details [247..366] deduced N/A No confident structure predictions are available.
    3 View Details [367..500] Pfam 19.769551 No description for PF08797.2 was found. No confident structure predictions are available.
    4 View Details [501..581] deduced N/A No confident structure predictions are available.
    5 View Details [582..663] PSI-BLAST 66.69897 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
    6 View Details [664..1277] PSI-BLAST 48.39794 No description for 2fdcA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle