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Protein Overview: gi|15219158, gi|...

General Information:
Name(s) found: gi|3834321 [NCBI NR]
gi|25307853 [NCBI NR]
gi|15219158 [NCBI NR]
Description(s) found:
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  • gi|3834321|gb|AAC83037.1| Strong similarity to F13P17.9 gi|3337356 transport protein SEC61 alpha subunit homolog from Arabidopsis thaliana BAC gb|AC004481 [NCBI NR]
  • pir||B96816 hypothetical protein F9K20.24 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15219158|ref|NP_177993.1| protein transport protein sec61, putative [Arabidopsis thaliana] [NCBI NR]
  • (Q9ZV90) F9K20.24 protein [athaliana3702.FASTAC.txt]
  • Strong similarity to F13P17.9 gi|3337356 transport protein SEC61 alpha subunit homolog from Arabidopsis thaliana BAC gb|AC004481gi|15219158|ref|NP_177993.1| protein transport protein sec61, putative [Arabidopsis thaliana]gi|25307853|pir||B96816 hypothet [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Protein transport protein sec61 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | protein transport protein sec61, putative | chr1:29610522-29612403 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein translocase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Strong similarity to F13P17.9 gi|3337356 transport protein SEC61 alpha subunit homolog from Arabidopsis thaliana BAC gb|AC004481 [nr-271106-contam.fasta]
  • | Symbols: | SecY protein transport family protein | chr1:29605629-29607510 FORWARD LENGTH=475 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F9K20.24 protein OS=Arabidopsis thaliana GN=F9K20.24 PE=3 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 475 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEA][ISS]
    Biological Process: protein transport [IEA]
    protein secretion [ISS]
    Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGFRVIHL VRPFLAFLPE VQSPERKIPF REKVIYTVIS LFIFLVCSQL PLYGIHSTTG  60
   61 ADPFYWMRVI LASSRGTVME LGITPIVTSG MVMQLLAGSK IIEIDNNVRE DRALLNGAQK 120
  121 LLGILIAVGQ AVAYVLSGMY GSVGELGVGN AILIIVQLCF AAIIVLCLDE LLQKGYGLGS 180
  181 GISLFIATNI CESIIWKAFS PTTINSGRGA QFEGAVIALF HLLITRTDKV RALREAFFRQ 240
  241 NLPNVTNLHA TVLIFLIVIY FQGFRVVLPV RSKNARGQRG SYPIKLFYTS NMPIILQSAL 300
  301 VSNIYFISQI LYRKFGGNFL VNLIGTWKES EYSGQSIPVG GIAYYITAPS SLAEMATHPF 360
  361 HALFYLVFML AACALFSKTW IEVSGSSAKD VARQLREQQM VMPGHRDSNL QKELNRYIPT 420
  421 AAAFGGLCIG ALTVLADLMG AIGSGTGILL AVTIIYQYFE TFEKEKASEL GFFGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..475] PSI-BLAST 76.69897 The structure of a protein conducting channel

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonucleoprotein binding
    		•  5.96221631042313 bayes_pls_golite062009
  • protein transporter activity
    		•  5.55929343005534 bayes_pls_golite062009
  • transporter activity
    		•  3.32223562584466 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.22714325269757 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven protein transmembrane transporter activity
    		•  2.12732472524264 bayes_pls_golite062009
  • macromolecule transmembrane transporter activity
    		•  2.12732472524264 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  1.76187269823414 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.67782980643723 bayes_pls_golite062009
  • binding
    		•  1.4562802789412 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.42890247609405 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  1.15847548838424 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  1.15316743403707 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.10003802565492 bayes_pls_golite062009
  • peptide transporter activity
    		•  1.01893828721893 bayes_pls_golite062009
  • protein binding
    		•  0.674651002700028 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle