YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15219158, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	56	0.93
Non-Cytoplasmic	57	75	0.91
Transmembrane Helix	76	98	0.84
Cytoplasmic	99	117	0.88
Transmembrane Helix	118	138	0.90
Non-Cytoplasmic	139	146	0.73
Transmembrane Helix	147	168	0.92
Cytoplasmic	169	175	0.87
Transmembrane Helix	176	196	0.93
Non-Cytoplasmic	197	244	0.63
Transmembrane Helix	245	268	0.84
Cytoplasmic	269	286	0.54
Transmembrane Helix	287	309	0.79
Non-Cytoplasmic	310	359	0.62
Transmembrane Helix	360	381	0.88
Cytoplasmic	382	415	0.91
Transmembrane Helix	416	435	0.86
Non-Cytoplasmic	436	439	0.62
Transmembrane Helix	440	459	0.82
Cytoplasmic	460	475	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGFRVIHL VRPFLAFLPE VQSPERKIPF REKVIYTVIS LFIFLVCSQL PLYGIHSTTG  60
   61 ADPFYWMRVI LASSRGTVME LGITPIVTSG MVMQLLAGSK IIEIDNNVRE DRALLNGAQK 120
  121 LLGILIAVGQ AVAYVLSGMY GSVGELGVGN AILIIVQLCF AAIIVLCLDE LLQKGYGLGS 180
  181 GISLFIATNI CESIIWKAFS PTTINSGRGA QFEGAVIALF HLLITRTDKV RALREAFFRQ 240
  241 NLPNVTNLHA TVLIFLIVIY FQGFRVVLPV RSKNARGQRG SYPIKLFYTS NMPIILQSAL 300
  301 VSNIYFISQI LYRKFGGNFL VNLIGTWKES EYSGQSIPVG GIAYYITAPS SLAEMATHPF 360
  361 HALFYLVFML AACALFSKTW IEVSGSSAKD VARQLREQQM VMPGHRDSNL QKELNRYIPT 420
  421 AAAFGGLCIG ALTVLADLMG AIGSGTGILL AVTIIYQYFE TFEKEKASEL GFFGL