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Protein Overview: gi|3212875, gi|7...

General Information:
Name(s) found: gi|7435395 [NCBI NR]
gi|3212875 [NCBI NR]
gi|15224381 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • pir||T00668 probable polygalacturonase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|3212875|gb|AAC23426.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|15224381|ref|NP_181916.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 394 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNISFPCA IIFFSINIFF LIKSSHAMPS FNVQRYGARG DGRADATKSF LTAWSLACGS  60
   61 RARAMVYVPR GTYLVKNLVF WGPCKNIITF KNDGTLVAPA NYWDIGNSGY WILFAKVNRI 120
  121 SVYGGTIDAR GAGYWSCRKK GSHCPQGARS ISFSWCNNVL LSGLSSFNSQ NMHVTVHHSS 180
  181 NVRIENVRIR APSGSPNTDG IHVQSSSGVT ISGGTIATGD DCIALSQGSR NIWIERVNCG 240
  241 PGHGISIGSL GDYANEEGVQ NVTVTSSVFT KTQNGVRIKT WARPSRGFVN NVVFRNLIMN 300
  301 NVENPVIIDQ NYCPNGKGCP RQSSGVKISG VTFANIKGTS TTPIAMKLDC SGSNHCTGLR 360
  361 LQDIKLTYMR RSSASYCRNA HGRASGVMVP RNCM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..394] PSI-BLAST 51.09691 Polygalacturonase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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