YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3212875, gi\|7...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNISFPCA IIFFSINIFF LIKSSHAMPS FNVQRYGARG DGRADATKSF LTAWSLACGS  60
   61 RARAMVYVPR GTYLVKNLVF WGPCKNIITF KNDGTLVAPA NYWDIGNSGY WILFAKVNRI 120
  121 SVYGGTIDAR GAGYWSCRKK GSHCPQGARS ISFSWCNNVL LSGLSSFNSQ NMHVTVHHSS 180
  181 NVRIENVRIR APSGSPNTDG IHVQSSSGVT ISGGTIATGD DCIALSQGSR NIWIERVNCG 240
  241 PGHGISIGSL GDYANEEGVQ NVTVTSSVFT KTQNGVRIKT WARPSRGFVN NVVFRNLIMN 300
  301 NVENPVIIDQ NYCPNGKGCP RQSSGVKISG VTFANIKGTS TTPIAMKLDC SGSNHCTGLR 360
  361 LQDIKLTYMR RSSASYCRNA HGRASGVMVP RNCM

Type	Start	End	Confidence
Signal Peptide	1	27	0.37
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	394	0.93