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Protein Overview: RFS5_ARATH

General Information:
Name(s) found: RFS5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|20148633|gb|AAM10207.1| raffinose synthase protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17065410|gb|AAL32859.1| raffinose synthase protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15242680|ref|NP_198855.1| SIP1 (seed imbibition 1-like); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] [NCBI NR]
  • gi|10178150|dbj|BAB11595.1| raffinose synthase protein [Arabidopsis thaliana] [NCBI NR]
  • Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1 [Swiss-Prot]
  • (Q9FND9) Raffinose synthase protein [athaliana3702.FASTAC.txt]
  • raffinose synthase protein [Arabidopsis thaliana]gi|20148633|gb|AAM10207.1| raffinose synthase protein [Arabidopsis thaliana]gi|17065410|gb|AAL32859.1| raffinose synthase protein [Arabidopsis thaliana]gi|15242680|ref|NP_198855.1| raffinose synthase fam [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Raffinose synthase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SIP1 | SIP1 (SEED IMBIBITION 1-LIKE); galactinol-sucrose galactosyltransferase/ hydrolase, hydrolyzing O-glycosyl compounds | chr5:16178948-16182313 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • raffinose synthase protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SIP1 | Raffinose synthase family protein | chr5:16161720-16165085 FORWARD LENGTH=783 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 783 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: sucrose biosynthetic process [IMP]
    mannitol biosynthetic process [IMP]
    raffinose family oligosaccharide biosynthetic process [IMP]
    response to water deprivation [IEP]
    Molecular Function: galactinol-sucrose galactosyltransferase activity [ISS]
    hydrolase activity, hydrolyzing O-glycosyl compounds [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPCLTKSD SGINGVDFTE KFRLEDSTLL ANGQVVLTDV PVNVTLTSSP YLVDKDGVPL  60
   61 DVSAGSFIGF NLDGEPKSHH VASIGKLKNI RFMSIFRFKV WWTTHWVGSN GRDIENETQI 120
  121 IILDQSGSDS GPGSGSGRPY VLLLPLLEGS FRSSFQSGED DDVAVCVESG STEVTGSEFR 180
  181 QIVYVHAGDD PFKLVKDAMK VIRVHMNTFK LLEEKSPPGI VDKFGWCTWD AFYLTVNPDG 240
  241 VHKGVKCLVD GGCPPGLVLI DDGWQSIGHD SDGIDVEGMN ITVAGEQMPC RLLKFEENHK 300
  301 FKDYVSPKDQ NDVGMKAFVR DLKDEFSTVD YIYVWHALCG YWGGLRPEAP ALPPSTIIRP 360
  361 ELSPGLKLTM EDLAVDKIIE TGIGFASPDL AKEFYEGLHS HLQNAGIDGV KVDVIHILEM 420
  421 LCQKYGGRVD LAKAYFKALT SSVNKHFNGN GVIASMEHCN DFMFLGTEAI SLGRVGDDFW 480
  481 CTDPSGDPNG TFWLQGCHMV HCAYNSLWMG NFIQPDWDMF QSTHPCAEFH AASRAISGGP 540
  541 IYISDCVGKH DFDLLKRLVL PNGSILRCEY YALPTRDRLF EDPLHDGKTM LKIWNLNKYT 600
  601 GVIGAFNCQG GGWCRETRRN QCFSECVNTL TATTSPKDVE WNSGSSPISI ANVEEFALFL 660
  661 SQSKKLLLSG LNDDLELTLE PFKFELITVS PVVTIEGNSV RFAPIGLVNM LNTSGAIRSL 720
  721 VYNDESVEVG VFGAGEFRVY ASKKPVSCLI DGEVVEFGYE DSMVMVQVPW SGPDGLSSIQ 780
  781 YLF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..562] PSI-BLAST 71.09691 Crystal structure of Alpha-galactosidase (EC 3.2.1.22) (Melibiase) (tm1192) from Thermotoga maritima at 2.34 A resolution
    2 View Details [563..671] PSI-BLAST 10.30103 Melibiase
    3 View Details [672..783] MSA 2.041982 View MSA. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle