YRC Public Data Repository - Protein Structure Prediction

Protein:	RFS5_ARATH
Organism:	Arabidopsis thaliana
Length:	783 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFS5_ARATH.

Description	E-value	Query Range	Subject Range
RFS2_ARATH - Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2	1006.0	[0..18]	[782..3]
gi\|488787, gi\|629602 - pir\|\|S45033 probable imbibition protein - wild cabbage, gi\|488787\|emb\|CAA55893.1\| putative imbibitio...	999.0	[0..18]	[782..3]
gi\|167100 - gi\|167100\|gb\|AAA32975.1\| seed imbibition protein [Hordeum vulgare subsp. vulgare] gi\|282994 - pir\|\|S27762 Sip1 protein - barley	998.0	[0..18]	[775..3]
gi\|108711675, gi... - gi\|50540754\|gb\|AAT77910.1\| putative raffinose synthase or seed imbibition protein [Oryza sativa (ja...	992.0	[0..18]	[781..3]
gi\|91075914 - gi\|91075914\|gb\|ABD52008.2\| alkaline alpha galactosidase [Cucumis sativus]	985.0	[0..18]	[782..3]
gi\|92870386, gi\|... - gi\|92874171\|gb\|ABE82476.1\| Raffinose synthase [Medicago truncatula], gi\|92870386\|gb\|ABE79689.1\| Raff...	983.0	[0..1]	[783..1]
gi\|162461529, gi... - gi\|68270843\|gb\|AAQ07251.2\|AF497510_1 alkaline alpha galactosidase 1 [Zea mays], gi\|162461529\|ref\|NP_...	971.0	[0..18]	[782..3]
gi\|29838631 - gi\|29838631\|gb\|AAM75140.1\| alkaline alpha galactosidase II [Cucumis melo]	969.0	[0..18]	[781..3]

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Predicted Domain #1

Region A:
Residues: [1-562]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPCLTKSD SGINGVDFTE KFRLEDSTLL ANGQVVLTDV PVNVTLTSSP YLVDKDGVPL  60
   61 DVSAGSFIGF NLDGEPKSHH VASIGKLKNI RFMSIFRFKV WWTTHWVGSN GRDIENETQI 120
  121 IILDQSGSDS GPGSGSGRPY VLLLPLLEGS FRSSFQSGED DDVAVCVESG STEVTGSEFR 180
  181 QIVYVHAGDD PFKLVKDAMK VIRVHMNTFK LLEEKSPPGI VDKFGWCTWD AFYLTVNPDG 240
  241 VHKGVKCLVD GGCPPGLVLI DDGWQSIGHD SDGIDVEGMN ITVAGEQMPC RLLKFEENHK 300
  301 FKDYVSPKDQ NDVGMKAFVR DLKDEFSTVD YIYVWHALCG YWGGLRPEAP ALPPSTIIRP 360
  361 ELSPGLKLTM EDLAVDKIIE TGIGFASPDL AKEFYEGLHS HLQNAGIDGV KVDVIHILEM 420
  421 LCQKYGGRVD LAKAYFKALT SSVNKHFNGN GVIASMEHCN DFMFLGTEAI SLGRVGDDFW 480
  481 CTDPSGDPNG TFWLQGCHMV HCAYNSLWMG NFIQPDWDMF QSTHPCAEFH AASRAISGGP 540
  541 IYISDCVGKH DFDLLKRLVL PN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.09691
Match:	1zy9A
Description:	Crystal structure of Alpha-galactosidase (EC 3.2.1.22) (Melibiase) (tm1192) from Thermotoga maritima at 2.34 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [563-671]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSILRCEYYA LPTRDRLFED PLHDGKTMLK IWNLNKYTGV IGAFNCQGGG WCRETRRNQC  60
   61 FSECVNTLTA TTSPKDVEWN SGSSPISIAN VEEFALFLSQ SKKLLLSGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.30103
Match:	1uasA
Description:	Melibiase
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [672-783]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDDLELTLEP FKFELITVSP VVTIEGNSVR FAPIGLVNML NTSGAIRSLV YNDESVEVGV  60
   61 FGAGEFRVYA SKKPVSCLID GEVVEFGYED SMVMVQVPWS GPDGLSSIQY LF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.876	N/A	N/A	d.82.2	Frataxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits