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Protein Overview: gi|15242866, gi|...

General Information:
Name(s) found: gi|15242866 [NCBI NR]
gi|10177051 [NCBI NR]
Description(s) found:
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  • gi|15242866|ref|NP_201175.1| zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10177051|dbj|BAB10463.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FFP4) Genomic DNA, chromosome 5, P1 clone:MBK5 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15242866|ref|NP_201175.1| zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Zinc finger (C3HC4 type RING finger) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | zinc finger (C3HC4 type RING finger) family protein | chr5:25511160-25514858 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 571 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: histone modification [IEA]
    transcription initiation [IEA]
    Molecular Function: DNA binding [IEA]
    zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDMNVVEI LDDEEEDEKE CEDWCFICKD GGNLMLCDFK DCPKVYHESC VEKDSSASKN  60
   61 GDSYICMWHS CYLCKKTPKL CCLCCSHAVC EGCVTHAEFI QLKGDKGLCN QCQEYVFALE 120
  121 EIQEYDAAGD KLDLTDRNTF ECLFLEYWEI AKKQEGLTFD DVRKVCASKP QKKGVKSKYK 180
  181 DDPKFSLGDV HTSKSQKKGD KLKNKDDPKF ALGDAHTSKS GKKGVKLKNK DDPKFLVSDH 240
  241 AVEDAVDYKK VGKNKRMEFI RWGSKPLIDF LTSIGEDTRE AMSQHSVESV IRRYIREKNL 300
  301 LDREKKKKVH CDEKLYSIFR KKSINQKRIY TLLNTHLKEN LDQVEYFTPL ELGFIEKNEK 360
  361 RFSEKNDKVM MPCKKQKTES SDDEICEKEV QPEMRATGFA TINADNLKLV YLRKSLVLEL 420
  421 LKQNDSFVDK VVGSFVKVKN GPRDFMAYQI LQVTGIKNAD DQSEGVLLHV SGMASGVSIS 480
  481 KLDDSDIREE EIKDLKQKVM NGLLRQTTVV EMEQKAKALH YDITKHRELL EKPSEQERLL 540
  541 KEIPRIIEDF IEIKQEPCVG GLSHEAVINI D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] PSI-BLAST 10.154902 No description for 2ysmA was found.
    2 View Details [189..249] deduced N/A No confident structure predictions are available.
    3 View Details [250..352] PSI-BLAST 13.0 Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana
    4 View Details [353..571] PSI-BLAST 33.69897 No description for 2bzeA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle