YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15242866, gi\|...
Organism:	Arabidopsis thaliana
Length:	571 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242866, gi|....

Description	E-value	Query Range	Subject Range
gi\|110289394 - gi\|110289394\|gb\|AAP54582.2\| Plus-3 domain containing protein, expressed [Oryza sativa (japonica cult...	286.0	[0..18]	[547..146]
gi\|11290564, gi\|... - gi\|6562264\|emb\|CAB62634.1\| putative protein [Arabidopsis thaliana], pir\|\|T45743 hypothetical protein...	271.0	[0..24]	[556..67]
gi\|50806703 - gi\|50806703\|ref\|XP_424488.1\| PREDICTED: similar to SMARCD1 protein [Gallus gallus]	244.0	[0..119]	[479..361]
gi\|109096584 - gi\|109096584\|ref\|XP_001111244.1\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-depen...	242.0	[0..119]	[479..258]
gi\|114644829 - gi\|114644829\|ref\|XP_001155833.1\| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regula...	241.0	[0..119]	[479..258]
gi\|157167397, gi... - gi\|157167397\|ref\|XP_001653905.1\| brg-1 associated factor [Aedes aegypti], gi\|108874229\|gb\|EAT38454.1...	239.0	[0..119]	[494..138]
gi\|89267384 - gi\|89267384\|emb\|CAJ82676.1\| SWI/SNF related, matrix associated, actin dependent regulator of chromat...	238.0	[0..119]	[479..127]

Back

Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDMNVVEI LDDEEEDEKE CEDWCFICKD GGNLMLCDFK DCPKVYHESC VEKDSSASKN  60
   61 GDSYICMWHS CYLCKKTPKL CCLCCSHAVC EGCVTHAEFI QLKGDKGLCN QCQEYVFALE 120
  121 EIQEYDAAGD KLDLTDRNTF ECLFLEYWEI AKKQEGLTFD DVRKVCASKP QKKGVKSKYK 180
  181 DDPKFSLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.154902
Match:	2ysmA
Description:	No description for 2ysmA was found.

Predicted Domain #2

Region A:
Residues: [189-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVHTSKSQKK GDKLKNKDDP KFALGDAHTS KSGKKGVKLK NKDDPKFLVS DHAVEDAVDY  60
   61 K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [250-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVGKNKRMEF IRWGSKPLID FLTSIGEDTR EAMSQHSVES VIRRYIREKN LLDREKKKKV  60
   61 HCDEKLYSIF RKKSINQKRI YTLLNTHLKE NLDQVEYFTP LEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	1v32A
Description:	Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [353-571]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFIEKNEKRF SEKNDKVMMP CKKQKTESSD DEICEKEVQP EMRATGFATI NADNLKLVYL  60
   61 RKSLVLELLK QNDSFVDKVV GSFVKVKNGP RDFMAYQILQ VTGIKNADDQ SEGVLLHVSG 120
  121 MASGVSISKL DDSDIREEEI KDLKQKVMNG LLRQTTVVEM EQKAKALHYD ITKHRELLEK 180
  181 PSEQERLLKE IPRIIEDFIE IKQEPCVGGL SHEAVINID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2bzeA
Description:	No description for 2bzeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits