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View Structure Prediction Details

Protein: gi|15242866, gi|...
Organism: Arabidopsis thaliana
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242866, gi|....

Description E-value Query
Range
Subject
Range
gi|110289394 - gi|110289394|gb|AAP54582.2| Plus-3 domain containing protein, expressed [Oryza sativa (japonica cult...
286.0 [0..18] [547..146]
gi|11290564, gi|... - gi|6562264|emb|CAB62634.1| putative protein [Arabidopsis thaliana], pir||T45743 hypothetical protein...
271.0 [0..24] [556..67]
gi|50806703 - gi|50806703|ref|XP_424488.1| PREDICTED: similar to SMARCD1 protein [Gallus gallus]
244.0 [0..119] [479..361]
gi|109096584 - gi|109096584|ref|XP_001111244.1| PREDICTED: similar to SWI/SNF-related matrix-associated actin-depen...
242.0 [0..119] [479..258]
gi|114644829 - gi|114644829|ref|XP_001155833.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regula...
241.0 [0..119] [479..258]
gi|157167397, gi... - gi|157167397|ref|XP_001653905.1| brg-1 associated factor [Aedes aegypti], gi|108874229|gb|EAT38454.1...
239.0 [0..119] [494..138]
gi|89267384 - gi|89267384|emb|CAJ82676.1| SWI/SNF related, matrix associated, actin dependent regulator of chromat...
238.0 [0..119] [479..127]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDMNVVEI LDDEEEDEKE CEDWCFICKD GGNLMLCDFK DCPKVYHESC VEKDSSASKN  60
   61 GDSYICMWHS CYLCKKTPKL CCLCCSHAVC EGCVTHAEFI QLKGDKGLCN QCQEYVFALE 120
  121 EIQEYDAAGD KLDLTDRNTF ECLFLEYWEI AKKQEGLTFD DVRKVCASKP QKKGVKSKYK 180
  181 DDPKFSLG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.154902
Match: 2ysmA
Description: No description for 2ysmA was found.

Predicted Domain #2
Region A:
Residues: [189-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVHTSKSQKK GDKLKNKDDP KFALGDAHTS KSGKKGVKLK NKDDPKFLVS DHAVEDAVDY  60
   61 K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [250-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVGKNKRMEF IRWGSKPLID FLTSIGEDTR EAMSQHSVES VIRRYIREKN LLDREKKKKV  60
   61 HCDEKLYSIF RKKSINQKRI YTLLNTHLKE NLDQVEYFTP LEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 1v32A
Description: Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [353-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFIEKNEKRF SEKNDKVMMP CKKQKTESSD DEICEKEVQP EMRATGFATI NADNLKLVYL  60
   61 RKSLVLELLK QNDSFVDKVV GSFVKVKNGP RDFMAYQILQ VTGIKNADDQ SEGVLLHVSG 120
  121 MASGVSISKL DDSDIREEEI KDLKQKVMNG LLRQTTVVEM EQKAKALHYD ITKHRELLEK 180
  181 PSEQERLLKE IPRIIEDFIE IKQEPCVGGL SHEAVINID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.69897
Match: 2bzeA
Description: No description for 2bzeA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle