| Protein: | gi|15242866, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 571 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15242866, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
286.0 | [0..18] | [547..146] |
|
|
271.0 | [0..24] | [556..67] |
|
|
244.0 | [0..119] | [479..361] |
|
|
242.0 | [0..119] | [479..258] |
|
|
241.0 | [0..119] | [479..258] |
|
|
239.0 | [0..119] | [494..138] |
|
|
238.0 | [0..119] | [479..127] |
|
Region A: Residues: [1-188] |
1 11 21 31 41 51
| | | | | |
1 MARDMNVVEI LDDEEEDEKE CEDWCFICKD GGNLMLCDFK DCPKVYHESC VEKDSSASKN 60
61 GDSYICMWHS CYLCKKTPKL CCLCCSHAVC EGCVTHAEFI QLKGDKGLCN QCQEYVFALE 120
121 EIQEYDAAGD KLDLTDRNTF ECLFLEYWEI AKKQEGLTFD DVRKVCASKP QKKGVKSKYK 180
181 DDPKFSLG
|
| Detection Method: |  |
| Confidence: | 10.154902 |
| Match: | 2ysmA |
| Description: | No description for 2ysmA was found. |
|
Region A: Residues: [189-249] |
1 11 21 31 41 51
| | | | | |
1 DVHTSKSQKK GDKLKNKDDP KFALGDAHTS KSGKKGVKLK NKDDPKFLVS DHAVEDAVDY 60
61 K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.576 | g.5.1 | Midkine |
| View | Download | 0.576 | g.5.1 | Midkine |
| View | Download | 0.569 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.547 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.509 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.492 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.471 | d.17.3 | Disulfide bond isomerase, DsbC, N-terminal domain |
| View | Download | 0.466 | b.34.9 | Tudor/PWWP/MBT |
| View | Download | 0.328 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.265 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.253 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.242 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.240 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
|
Region A: Residues: [250-352] |
1 11 21 31 41 51
| | | | | |
1 KVGKNKRMEF IRWGSKPLID FLTSIGEDTR EAMSQHSVES VIRRYIREKN LLDREKKKKV 60
61 HCDEKLYSIF RKKSINQKRI YTLLNTHLKE NLDQVEYFTP LEL
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1v32A |
| Description: | Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g08430 from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [353-571] |
1 11 21 31 41 51
| | | | | |
1 GFIEKNEKRF SEKNDKVMMP CKKQKTESSD DEICEKEVQP EMRATGFATI NADNLKLVYL 60
61 RKSLVLELLK QNDSFVDKVV GSFVKVKNGP RDFMAYQILQ VTGIKNADDQ SEGVLLHVSG 120
121 MASGVSISKL DDSDIREEEI KDLKQKVMNG LLRQTTVVEM EQKAKALHYD ITKHRELLEK 180
181 PSEQERLLKE IPRIIEDFIE IKQEPCVGGL SHEAVINID
|
| Detection Method: | |
| Confidence: | 33.69897 |
| Match: | 2bzeA |
| Description: | No description for 2bzeA was found. |
