YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PUB18_ARATH

General Information:
Name(s) found: PUB18_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
SHOW ALL
  • U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 697 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: protein ubiquitination [IDA]
    Molecular Function: ubiquitin-protein ligase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR  60
   61 RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ KLKFLLEDCT RDGARLCMMM 120
  121 NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV 180
  181 SSINRILALF VNRVVPDPDE INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS 240
  241 DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI 300
  301 MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI 360
  361 VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING GEEMIYRAVR EIRVQTKTSS 420
  421 FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN 480
  481 EGAKTETRLY SASALFYLSS VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM 540
  541 GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG 600
  601 LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY 660
  661 GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..360] PSI-BLAST 20.39794 Crystal structure of the CHIP U-box E3 ubiquitin ligase
    2 View Details [361..697] PSI-BLAST 41.0 Structure of the Kap60p:Nup2 complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle