| Protein: | PUB18_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 697 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB18_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
340.0 | [0..1] | [697..1] |
|
Region A: Residues: [1-360] |
1 11 21 31 41 51
| | | | | |
1 MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR 60
61 RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ KLKFLLEDCT RDGARLCMMM 120
121 NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV 180
181 SSINRILALF VNRVVPDPDE INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS 240
241 DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI 300
301 MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI 360
361
|
| Detection Method: |  |
| Confidence: | 20.39794 |
| Match: | 2c2lA |
| Description: | Crystal structure of the CHIP U-box E3 ubiquitin ligase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.02652482814057 | bayes_pls_golite062009 |
|
Region A: Residues: [361-697] |
1 11 21 31 41 51
| | | | | |
1 VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING GEEMIYRAVR EIRVQTKTSS 60
61 FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN 120
121 EGAKTETRLY SASALFYLSS VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM 180
181 GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG 240
241 LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY 300
301 GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW
|
| Detection Method: | |
| Confidence: | 41.0 |
| Match: | 2c1tA |
| Description: | Structure of the Kap60p:Nup2 complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
