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Protein Overview: SYYM_ARATH

General Information:
Name(s) found: SYYM_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Tyrosine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=EMB2768 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 511 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    Biological Process: tRNA aminoacylation for protein translation [ISS]
    embryonic development ending in seed dormancy [IMP]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA][ISS]
    tyrosine-tRNA ligase activity [IEA]
    aminoacyl-tRNA ligase activity [IEA][ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYATGITFA SRSILPICSR TFLSPLRVAS LLVFPEKSSA TFFRRVQVPH LFSTSTTTLF  60
   61 SSVKCSIHST SSPETENQAV FRPNVVDILE ERGLLESITS ENLRSACSDP KVAPLRVYCG 120
  121 FDPTAESLHL GNLLGIIVLS WFQRCGHQAV GLIGGATGRV GDPSGKSLER PELDADTLEK 180
  181 NIAGITKIII KILGSNPSPG GSYVIFNNYD WWKDMTMLDF LNKVGRFARV GTMMAKESVK 240
  241 KRLESEQGMS YTEFTYQLLQ AYDFLHLFKN EGINVQIGGS DQWGNITAGT DLIRKILQAE 300
  301 EAAYGLTFPL LLKNDGTKFG KSEDGAIWLS PSMLSPYKFY QYFFSVPDVD VIRFLKTLTF 360
  361 LSLDEIKILE DQMSKPGYVP NTAQIKLAEE VTRFVHGEEG LKEAIKATEA LRPGAETKLD 420
  421 WNLIERIAED IPSCSLPIDR VSGLSIVDLS VSAGLFESKS AARRMLKQGG FYMNNERVDD 480
  481 ENKRVDEEDI VEGRGLVLSA GKKNKVVVRI S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 68.30103 Crystal structure of an active fragment of human tryptophanyl-tRNA synthetase with cytokine activity
    2 View Details [92..511] PSI-BLAST 117.0 STRUCTURE OF TYROSYL-T/RNA SYNTHETASE REFINED AT 2.3 ANGSTROMS RESOLUTION. INTERACTION OF THE ENZYME WITH THE TYROSYL ADENYLATE INTERMEDIATE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.16276509815667 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.16276509815667 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.13957775963187 bayes_pls_golite062009
  • tyrosine-tRNA ligase activity
    		•  6.18775771640881 bayes_pls_golite062009
  • ligase activity
    		•  6.11211476973434 bayes_pls_golite062009
  • glutamate-tRNA ligase activity
    		•  2.63681738794687 bayes_pls_golite062009
  • methionine-tRNA ligase activity
    		•  2.56893064485672 bayes_pls_golite062009
  • catalytic activity
    		•  2.37674226834122 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.50161401062914 bayes_pls_golite062009
  • tryptophan-tRNA ligase activity
    		•  1.14187887833901 bayes_pls_golite062009
  • cysteine-tRNA ligase activity
    		•  0.844943947059557 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.625793556381714 bayes_pls_golite062009
  • binding
    		•  0.485102284225571 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.449504767632354 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.2293846471193 bayes_pls_golite062009
  • glutamine-tRNA ligase activity
    		•  0.118292082006187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.67

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle