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Protein Overview: gi|7268199, gi|5...

General Information:
Name(s) found: gi|7268199 [NCBI NR]
gi|58652114 [NCBI NR]
gi|25347959 [NCBI NR]
gi|21554359 [NCBI NR]
gi|18411672 [NCBI NR]
gi|15215626 [NCBI NR]
Description(s) found:
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  • gi|7268199|emb|CAB77726.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|58652114|gb|AAW80882.1| At4g01560 [Arabidopsis thaliana] [NCBI NR]
  • pir||C85020 hypothetical protein AT4g01560 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21554359|gb|AAM63466.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|18411672|ref|NP_567213.1| MEE49 (maternal effect embryo arrest 49) [Arabidopsis thaliana] [NCBI NR]
  • gi|15215626|gb|AAK91358.1| AT4g01560/F11O4_6 [Arabidopsis thaliana] [NCBI NR]
  • (Q9M125) Hypothetical protein (AT4g01560/F11O4_6) [athaliana3702.FASTAC.txt]
  • unknown [Arabidopsis thaliana]gi|7268199|emb|CAB77726.1| hypothetical protein [Arabidopsis thaliana]gi|15215626|gb|AAK91358.1| AT4g01560/F11O4_6 [Arabidopsis thaliana]gi|25347959|pir||C85020 hypothetical protein AT4g01560 [imported] - Arabidopsis thali [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Brix domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MEE49 | MEE49 (maternal effect embryo arrest 49) | chr4:677266-679164 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT4g01560/F11O4_6 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At4g01560 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MEE49 | Ribosomal RNA processing Brix domain protein | chr4:677266-679164 REVERSE LENGTH=343 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT4g01560/F11O4_6 OS=Arabidopsis thaliana GN=AT4g01560 PE=2 SV=1 [ARATH-contam.fasta]
  • AT4g01560/F11O4_6 OS=Arabidopsis thaliana GN=MEE49 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 343 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: embryonic development ending in seed dormancy [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK  60
   61 QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV CRPDDEELFA DIDADEFNPV 120
  121 LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL 180
  181 IVVHTNRREP DALLIIGLPN GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG 240
  241 NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL 300
  301 QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] MSA 6.160997 View MSA. No confident structure predictions are available.
    2 View Details [109..227] PSI-BLAST 16.221849 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    3 View Details [228..343] FFAS03 1.7 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.58650371779212 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.58624422951947 bayes_pls_golite062009
  • ligase activity
    		•  2.71574082295198 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.35871952544841 bayes_pls_golite062009
  • binding
    		•  1.78917266819015 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.665778090365515 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle