YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15226250, gi|...

General Information:
Name(s) found: gi|7485475 [NCBI NR]
gi|3337353 [NCBI NR]
gi|15226250 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • pir||T02310 hypothetical protein At2g34220 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|3337353|gb|AAC27398.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15226250|ref|NP_180969.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • (O80771) At2g34220 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|7485475|pir||T02310 hypothetical protein At2g34220 [imported] - Arabidopsis thalianagi|15226250|ref|NP_180969.1| hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 718 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: embryonic development ending in seed dormancy [IMP]
    pollen development [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKSTDESE TKWKIDDAAE LARDFWLERD GISALKLTEK TISDHGNHEK CSSHHELQGD  60
   61 IFYAQAKKTD DTDLKCLYLF ASVDAYSMAT LLSPNALTLR SFRGYARSLI KLGDQLRINK 120
  121 FYEKAVSKAK LGMSITSPQG KSTDGGYFTK IKTELQNWID LATTKMQATV AVSDIGTMDN 180
  181 QKEPGEEDTS FDRLKKIWVK LDDKTKINFL VVDFEKLIGY IQDKHGTEVK EHFQKCIPIA 240
  241 NNLRWRCWKC HICSQVNYCF TDCKMHILDN HVHNSEPDFS ARPKCVDEIL ADMICCGDWK 300
  301 PVDTAEAENL IKDRAKRGEE FVYVNGWCSD WPEAKDRERE NVLKQFAEVL KSSCAKENCT 360
  361 LSCTLWDWLR DYTEENLELP GVPGIYLDQC CFFKNPQCIC FLDLKHLEHI LKYFRQLTTD 420
  421 VRASLVPKVV NQFWENSQVK ERIDLEGVAT YNLLLDKRLL YEEELESDKI GTVEHYKSTG 480
  481 IFEDVMPKGD KIVSWILDCP EIDREFVSQM ANGVHNSKLW LAALRIVRCV IRKKESYYDK 540
  541 RRKMLTYEKM LGEAETICDR EDTRKNVNQR STYESALRMK CEDLVGKQDD DTKCFLSVVR 600
  601 DVFERQSSPS FEVFEDKKCI SELSSTVPND DVKKSLLTLR KSLKEKFPLI DSKILQNKST 660
  661 YEKLIDVFPK LSAVEYRLVV LPFVKKFLQD KLKKMMKTNS SSVAAGDSAE RKPKKRHL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..325] FFAS03 1.31 Crystal structure of the CHIP U-box E3 ubiquitin ligase
    2 View Details [326..607] deduced N/A No confident structure predictions are available.
    3 View Details [608..718] MSA 1.016981 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0159092335062434 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle