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View Structure Prediction Details

Protein: gi|15226250, gi|...
Organism: Arabidopsis thaliana
Length: 718 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15226250, gi|....

Description E-value Query
Range
Subject
Range
gi|42569389 - gi|42569389|ref|NP_180333.2| ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana]
1025.0 [0..10] [715..4]

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Predicted Domain #1
Region A:
Residues: [1-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMKSTDESE TKWKIDDAAE LARDFWLERD GISALKLTEK TISDHGNHEK CSSHHELQGD  60
   61 IFYAQAKKTD DTDLKCLYLF ASVDAYSMAT LLSPNALTLR SFRGYARSLI KLGDQLRINK 120
  121 FYEKAVSKAK LGMSITSPQG KSTDGGYFTK IKTELQNWID LATTKMQATV AVSDIGTMDN 180
  181 QKEPGEEDTS FDRLKKIWVK LDDKTKINFL VVDFEKLIGY IQDKHGTEVK EHFQKCIPIA 240
  241 NNLRWRCWKC HICSQVNYCF TDCKMHILDN HVHNSEPDFS ARPKCVDEIL ADMICCGDWK 300
  301 PVDTAEAENL IKDRAKRGEE FVYVN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.31
Match: 2c2lA
Description: Crystal structure of the CHIP U-box E3 ubiquitin ligase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0159092335062434 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [326-607]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWCSDWPEAK DRERENVLKQ FAEVLKSSCA KENCTLSCTL WDWLRDYTEE NLELPGVPGI  60
   61 YLDQCCFFKN PQCICFLDLK HLEHILKYFR QLTTDVRASL VPKVVNQFWE NSQVKERIDL 120
  121 EGVATYNLLL DKRLLYEEEL ESDKIGTVEH YKSTGIFEDV MPKGDKIVSW ILDCPEIDRE 180
  181 FVSQMANGVH NSKLWLAALR IVRCVIRKKE SYYDKRRKML TYEKMLGEAE TICDREDTRK 240
  241 NVNQRSTYES ALRMKCEDLV GKQDDDTKCF LSVVRDVFER QS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [608-718]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSFEVFEDK KCISELSSTV PNDDVKKSLL TLRKSLKEKF PLIDSKILQN KSTYEKLIDV  60
   61 FPKLSAVEYR LVVLPFVKKF LQDKLKKMMK TNSSSVAAGD SAERKPKKRH L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle